Streptomyces huangiella: ABVG11_28850
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Entry
ABVG11_28850 CDS
T11406
Name
(GenBank) DEDDh family exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
shug Streptomyces huangiella
Pathway
shug03030
DNA replication
shug03430
Mismatch repair
shug03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABVG11_28850
03430 Mismatch repair
ABVG11_28850
03440 Homologous recombination
ABVG11_28850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shug03032
]
ABVG11_28850
03400 DNA repair and recombination proteins [BR:
shug03400
]
ABVG11_28850
Enzymes [BR:
shug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABVG11_28850
DNA replication proteins [BR:
shug03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABVG11_28850
DNA repair and recombination proteins [BR:
shug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABVG11_28850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
BRCT
DNA_pol_A_exo1
PTCB-BRCT
HisKA_3
Motif
Other DBs
NCBI-ProteinID:
XUZ89864
LinkDB
All DBs
Position
complement(6557741..6558736)
Genome browser
AA seq
331 aa
AA seq
DB search
MLEDPTEAAPQLAPDSSWPPGYPQGYAVVDVETTGLARDDRIVSAAVYRLDARGTVEDHW
YTLVNPQRDPGPVWIHGLTREVLADAPLFPEIAGALAERLDGRVLVAHNAVFDWSMLARE
YARAGSAAPVRQRLCTIALSKELGLPLANHKLESLAAHYGVVQERAHHALDDARVLAEAF
RPSLRKAAAAGLRLPLLACQPLTEWSDGPSGGIGRQRSYRPTSWRPSRKRPACPYPNPGR
YEPGGALVQGMRVAFSGDTSVDRELLEDRAVDAGLHVATSVSRLTSLLVTNDPESATSKT
VKARSFGTPVIDEAAFMQLLQDVTPAPPTNR
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaagaccccacggaagccgcaccgcagctcgctccggactcgtcgtggccgccc
ggttatccgcaggggtacgcggtcgtcgacgtcgagaccaccgggctcgcccgggacgac
cggatcgtgtcggccgcggtctaccggctcgacgcccggggcacggtggaggaccactgg
tacaccctggtcaatccgcagcgcgatcccgggccggtgtggatccacgggctgacgcgg
gaggtgctggcggacgcgccgctcttccccgagatcgccggcgcgctcgccgagcggctg
gacggccgggtcctggtcgcgcacaacgccgtcttcgactggtcgatgctggcccgtgag
tacgcccgcgccggcagcgcggcaccggtgcgccagcggctgtgcaccatcgccctctcc
aaggagctcgggctaccgctggccaaccacaagctggagtcgctggcggcgcactacgga
gtggtgcaggagcgcgcccaccacgcgctggacgacgcccgggtgctcgccgaggcgttc
cggccgagtctgcgcaaggcggccgcggccgggctgcggctgcccctgctggcctgtcag
ccgctgaccgagtggtccgacggaccgtcgggcgggatcggccgccagcgttcgtaccgg
ccgacgagctggcgccccagccgtaagcggcccgcctgcccgtaccccaacccggggcgc
tacgaaccgggcggcgcgctggtgcaggggatgcgggtggcgttctccggggacacctcg
gtcgaccgcgaactgctggaggaccgggccgtggacgccgggctgcacgtggccaccagc
gtgtcccggctcaccagcctgctggtcaccaatgatccggagtcggccacctccaagacc
gtcaaggcgcgctccttcggcaccccggtcatcgacgaggcggctttcatgcagctcctc
caggacgtcactcccgcaccgccgacaaacaggtga
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