Stella humosa: STHU_08370
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Entry
STHU_08370 CDS
T06078
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shum
Stella humosa
Pathway
shum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
STHU_08370 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shum03021
]
STHU_08370 (rpoC)
03400 DNA repair and recombination proteins [BR:
shum03400
]
STHU_08370 (rpoC)
Enzymes [BR:
shum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
STHU_08370 (rpoC)
Transcription machinery [BR:
shum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
STHU_08370 (rpoC)
DNA repair and recombination proteins [BR:
shum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
STHU_08370 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BBK30203
LinkDB
All DBs
Position
900132..904304
Genome browser
AA seq
1390 aa
AA seq
DB search
MVMNELMNIFGQPSGPQSFDQIQISIASPERIRSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLK
SLPSRIGLLLDMTLKDLERVLYFENYVVIEPGLTPLKLHQLLSEDEFYRYQDDFGEDAFT
AKIGAEALKAMLSAIDLQPEQEKLRGDLRDTTSEAKRKKLVKRLKLIDAFLQSGSRPEWM
ILDVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELKLHQCGLPKKMALELFKPFIYSKLELRGLATTIKAAKRMVEKERPEVWDILEEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYITMERDADPGEGMAFSTVAEIQQAL
DAKAVTLHAKVQCRYHTVDKDNKPITVRVTTTPGRMLLSEILPRNPAISFELINRVLTKK
EITNVIDMVYRHCGQKETVIFCDRLMSLGFGHACRAGISFGKDDLVVPKEKVELVRDAED
KVKEYEQQYLDGLITQGEKYNKVVDVWSSCTEKVADAMMKEISRPSGKINAVYMMAHSGA
RGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDAIIIEEDCGTQRGLTVTPVVDGGEVIAPLSERILGRTASHAVMD
PLTGRELAPPGGLLDEEMVEKIERAGIDSIGIRSVLTCETKGGVCGKCYGRDLARGTVVN
IGEAVGVIAAQSIGEPGTQLTMRTFHIGGAVQRGAEQSSIEAAFDSVVRVKNRNVVVNSL
GVMIVMSRNTEIVLADEAGRERARHKVPYGAKLLIDEGTAVTKGQKIADWDPYTIPIITE
RNGTAHYVDLVEGVSIREVVDEATGISSKVVVDWKQQPRGNDLRPRIVLRDNRGEALTLA
SGVEARYFMSVDAILSIENGAEVQAGDVVARIPRESSKTRDITGGLPRVAELFEARRPKD
FAIISEIDGRVEFGKDYKTKRRIVVVPADAEAGGPREYMIPKGKHISVQEGDFVAKGDLL
MDGNPVPHDILNVMGVEALSEYLTNEIQDVYRLQGVKINDKHIEVIVRQMLQKMEIMDGG
ETTFLVGEQVDREEFAAENAKVEEAGGRPAKAKPVLQGITKASLQTNSFISAASFQETTR
VLTEAAVSGKIDSLAGLKENVIVGRLIPAGTGSVVNRLRKIAAERDRVILAGDGGQPTAL
PAEPPQARSA
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggtcatgaacgagctgatgaacatcttcggccagccgagcggcccccagagtttcgat
cagatccagatctcgatcgcgagccctgagcggatccgttcctggtcgttcggcgagatc
aagaagccggagaccatcaactaccgcaccttcaagccggagcgggacgggctgttctgc
gcccgcatcttcggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatg
aagtatcgcggcatcatctgcgagaagtgcggcgtcgaggtcacgctgtcgaaggtccgg
cgcgagcgcatgggccatatcgagctggcctcgcccgtcgcccacatctggttcctgaag
tcgctgccgagccgcatcggcctgctgctcgacatgacgctgaaggacctggagcgggtc
ctctatttcgagaactacgtcgtcatcgagccgggcctgacgccgctgaagctgcatcag
ttgctgtccgaggacgagttctaccgctaccaggacgatttcggcgaggacgccttcacc
gccaagatcggcgccgaggcgctgaaggcgatgctgtcggcgatcgacctgcagcccgag
caggagaagctgcgcggcgacctgcgcgacacgacctccgaggccaagcgcaagaagctg
gtcaagcggctgaagctgatcgacgccttcctccagtccggcagccggccggaatggatg
atcctggacgtcgtgccggtcatcccgcccgagctgcgcccgctggtgccgctcgacggt
ggccgcttcgccacgtcggacctgaacgacctctatcgccgcgtcatcaaccgcaacaac
cgcctgaagcgactgatcgagctacgcgcgcccgacatcatcgtgcgcaacgagaagcgc
atgctgcaggaggcggtcgacgccctcttcgacaacggccgccgcggccgcgtcatcacc
ggcgccaacaagcggccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgc
ttccgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtcgtg
gggcctgagctgaagctgcaccagtgcggcctgcccaagaagatggcgctggagctgttc
aagcccttcatctactccaagctcgagctgcgcggcctggccaccaccatcaaggcggcc
aagcgcatggtggagaaggagcggccggaggtctgggacatcctggaagaggtgatccgc
gagcatccggtcatgctgaaccgggcgccgacgctgcatcgtctcggcatccaggcgttc
gagccggttctcatcgagggcaaggcgatccagctgcacccgctggtctgcaccgccttc
aacgcggacttcgacggcgaccagatggcggtgcacgtgccgctgtcgctggaagcccag
cttgaagcccgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaag
ccgatcatcgtgccgtcgcaggatatcgtgctcggcctctactacatcaccatggagcgc
gacgccgacccgggcgagggcatggccttcagcacggtggccgagatccagcaggcgctc
gacgccaaggccgtgacgctgcacgccaaggtgcagtgccgctaccacacggtcgacaag
gacaacaagccgatcacggtgcgggtcacgaccacgcccggccgcatgctgctgtccgag
atcctgccgcgcaacccggcgatcagcttcgagctgatcaaccgcgtgttgacgaagaag
gaaatcaccaacgtcatcgacatggtctaccgtcactgcgggcagaaggagacggtgatc
ttctgcgaccggctgatgtcgctgggcttcgggcatgcctgccgtgccggcatctcgttc
ggcaaggacgacctcgtcgtgccgaaggagaaggtcgagctggtgcgcgacgccgaggac
aaggtgaaggagtacgagcagcagtatctcgacggcctcatcacccagggcgagaagtac
aacaaggtcgtcgacgtctggtcgtcctgcaccgagaaggtggcggacgcgatgatgaag
gagatctcgcgccccagcggcaagatcaacgcggtctacatgatggcgcattccggcgcc
cgtggctcggccgcccagatcaagcagctggccggcatgcgcggcctcatggccaagccg
tcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaaggcctgacggtgctg
gagtacttcaactccacgcacggcgcccgcaagggcctggccgacacggcgctgaagacg
gccaactccggctatctgacgcgccgcctggtcgacgtggcccaggacgccatcatcatc
gaggaggattgcgggacgcagcgcggcctgacggtcaccccggtggtcgacggcggcgag
gtcatcgcgcccctgtccgagcgcatcctcggccgcaccgcctcgcacgcggtgatggat
ccactgacgggccgcgaactggcccctccgggtggtctcctcgacgaggagatggtcgag
aagatcgagcgtgccggcatcgactccatcggcatccgctcggtgctgacctgcgagacc
aagggcggcgtctgcggcaagtgctacggccgtgacctggcccgcggcacggtggtcaac
atcggcgaggccgtgggcgtgatcgccgcccagtcgatcggcgagcccggcacccagctc
accatgcgcaccttccacatcggcggtgcggtgcagcgcggtgccgagcagtccagcatc
gaggcggcgttcgactccgtcgtgcgggtcaagaaccgcaacgtcgtggtcaacagcctg
ggcgtcatgatcgtcatgagccggaacaccgagatcgtgctggccgacgaggccggtcgc
gagcgcgcccgtcacaaggtgccctacggtgccaagctgctcatcgacgagggcaccgcg
gtcaccaagggccagaagatcgccgactgggatccctacacgatcccgatcatcaccgag
cgcaacggcaccgcccactatgtcgacctggtcgagggcgtgtcgatccgcgaggtggtg
gacgaggcgacgggcatctcgtccaaggtcgtcgtcgactggaagcagcaaccccgcggc
aacgacctgcgcccgcgcatcgtgctgcgcgacaatcgcggcgaggcgctgacgctggcg
agcggcgtcgaggcccgctacttcatgtcggtcgacgccatcctcagcatcgagaatggt
gccgaggtccaggccggcgacgtggtcgcccgcatcccgcgggaatcgtccaagacgcgc
gacatcaccggcggtctgccgcgggtggccgagctgttcgaggcacgtcgccccaaggac
ttcgcgatcatcagcgagatcgacggccgggtggagttcggcaaggactacaagaccaag
cgccgcatcgtcgtcgtcccggcggatgccgaggcgggcggcccgcgggaatacatgatc
cccaagggcaagcacatcagcgtccaggaaggcgacttcgtggccaagggcgacctgctg
atggacggcaacccggtgccccatgacatcctcaacgtcatgggcgtcgaggcgctgtcg
gaatacctgaccaacgagatccaggacgtctatcggctccagggcgtgaagatcaacgac
aagcacatcgaggtgatcgtccgccagatgctccagaagatggagatcatggatggcggc
gagaccaccttcctggtgggcgagcaggtcgaccgcgaggagttcgcggccgagaacgcc
aaggtggaggaagcgggcggccggccggcgaaggccaagccggtgctccagggcatcacc
aaggcatcgctgcagaccaactcgttcatctcggccgcttcgttccaggagaccacccgc
gtcctcaccgaggcggccgtctccggcaagatcgacagcctggccggcctgaaggagaac
gtgatcgtcggccgcctgatcccggccggcaccggcagcgtcgtcaatcgcctgcgcaag
atcgcagccgagcgcgaccgggtgatcctggcgggcgacggtggccagccgaccgccctg
ccggccgagccgccgcaggcccgctcggcctga
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integrated database retrieval system
