Stella humosa: STHU_26910
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Entry
STHU_26910 CDS
T06078
Name
(GenBank) MBL fold hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
shum
Stella humosa
Pathway
shum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STHU_26910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shum03019
]
STHU_26910
Messenger RNA biogenesis [BR:
shum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STHU_26910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
RNase_J_C
Motif
Other DBs
NCBI-ProteinID:
BBK32057
LinkDB
All DBs
Position
complement(2837322..2839010)
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AA seq
562 aa
AA seq
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MAPAAALTSGAFPPGAPQDLHFLALGGSGEIGMNLNLYAYKGKWLMVDLGVTFGDDSTPG
VDVIMPDIGFIADRRDALAGLVLTHGHEDHIGAVQYLWPRLKCPVYATPFTAALLRRKLA
ETGLADMPITIIPMEGRFQVGPFDLELITLTHSIPEPNAVVIRTGQGTILHTGDWKLDPD
PLVGPVADEAALKALGDEGVLVMIGDSTNAMRDGESGSEGEVRSALLSLVARCKGRVAIA
CFASNVARLQTMIDVAKATDRQIALVGRSLWRIVAAARETGYLDRDVPFLDDREAAYVPR
DQLLMVCTGSQGEPRAALPRIANGTHPKITLEAGDSCIFSSRIIPGNEKSIGKLQDDLLR
LGVEVLTERDHFVHVSGHPCRDELVRMYQWVRPQLAIPVHGEHRHMVAHAELALTCQVPQ
ALVTANGSLIRLAPGKPAIVAQVPSGRVAVEGDALLPLEGPSLKTRSRIANHGAVVATLV
LNGEGRPIAPAQVAAPGLFDPEVDAGEITALGRTASSAFDRLSKADRRDDSVVEAAVASA
LRRYVREGRGKRPTISVHLVRV
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggcaccggcagccgcgctgacttcgggcgccttcccgccgggcgcgccccaggatctc
catttcctcgccctcggcggctcgggcgagatcgggatgaacctcaacctctacgcctac
aagggcaagtggctgatggtcgacctgggtgtcacgttcggcgatgattcgacgccgggc
gtcgacgtcatcatgcccgacatcggcttcatcgccgatcgccgggatgcgctggccggc
ctcgtgctgacccatggccacgaggaccatatcggcgccgtccagtatctctggccgcgc
ctgaagtgcccggtctatgccacgcccttcaccgcggccctgctccggcgcaagctggcc
gagacgggcctggccgacatgcccatcaccatcatcccgatggaaggccgcttccaggtc
ggcccgttcgacctggaactgatcacgctcacccattcgatccccgagcccaatgcggtc
gtcatccgcaccggccagggcaccatcctccataccggcgactggaagctcgaccctgac
ccgctggtcggccccgtcgccgacgaggcagccctgaaggccctgggcgacgaaggcgtg
ctggtgatgatcggcgattcgaccaacgccatgcgcgacggcgagtcgggttcggagggg
gaggtgcgcagcgcgctgctgtcgctggtcgcccgctgcaagggccgggtggcgatcgcc
tgcttcgcttccaacgtcgcccggctgcagacgatgatcgacgtggcgaaggcgaccgac
cgccagattgcgctggtcggccgctcgctgtggcgcatcgtggcggccgcgcgcgagacc
ggctacctcgaccgcgacgtgccgttcctggacgaccgcgaggcggcatacgtgccgcgc
gaccagttgctgatggtctgcaccggcagccagggcgagccgcgcgcggccctgccgcgg
atcgccaacggcacgcatcccaagattacgctggaagccggcgattcctgcatcttctcg
tcgcgcatcatccccggcaacgagaagtcgatcggcaagctgcaggacgaccttctgcgc
ctgggcgtcgaggtgctgaccgagcgcgaccatttcgtccatgtctcgggccatccctgc
cgcgacgagctggtgcgcatgtaccagtgggtgcgcccgcaactggccatcccggtgcat
ggcgagcatcgccacatggtggcgcacgccgagctggcgctgacctgccaggtgccgcag
gcgctggtgacggccaacggctcgctgatccgcctggcgcccggcaagcccgccatcgtg
gcccaggtcccgtcgggccgggtggcggtcgagggcgacgccctgctgccgctggaaggc
ccctcgctcaagacgcgcagccgcatcgccaatcacggggcggtggtggccacgctggtg
ctgaacggcgaggggcggccgatcgcgccggcccaggtggcggcccccggcctcttcgac
ccggaggtcgacgcgggcgagatcacggcacttggccggacggcctcctcggcgttcgac
cgcctcagcaaggccgaccgccgcgacgactccgtggtcgaggcggccgtcgcctccgca
ctccggcgctatgtccgcgaagggcgtggaaaacggccgacgatctccgtacatctggtc
cgggtgtaa
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