Stella humosa: STHU_31660
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Entry
STHU_31660 CDS
T06078
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
shum
Stella humosa
Brite
KEGG Orthology (KO) [BR:
shum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shum03032
]
STHU_31660 (topA)
03400 DNA repair and recombination proteins [BR:
shum03400
]
STHU_31660 (topA)
Enzymes [BR:
shum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
STHU_31660 (topA)
DNA replication proteins [BR:
shum03032
]
Prokaryotic type
DNA Topoisomerases
STHU_31660 (topA)
DNA repair and recombination proteins [BR:
shum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
STHU_31660 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Zn_ribbon_Top1
Toprim
Motif
Other DBs
NCBI-ProteinID:
BBK32532
LinkDB
All DBs
Position
3347425..3350118
Genome browser
AA seq
897 aa
AA seq
DB search
MLASYGHVRDLPAKDGSVDPEHDFNMLWEVDGRSEKHMRAIADAAKGATNLYLATDPDRE
GEAISWHVREVLEQRRALKGVEVQRVVFNEITKSAIVEAFKHPRALNRELVDAYLARRAL
DYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLVCEREAEIEAFKPQEYWTVEATFQTEEG
NRFTARLTHLAGRKLEKLDIANAAGAAAAVAAVEARSFHVGPVERKQVRRHPQPPFTTST
LQQEASRQIGMTASRTMRTAQRLYEGVDIGGETVGLITYMRTDGVQISGEAIAAARRLIG
GRYGEKYVPDAPRVYRTQAKNAQEAHEGIRPTDMFRTPDQVSSQLSDEERRLYELIWRRT
VASQMESALLEQVGADLLSGDRQVTLRATGSTLLFDGFLKLYREGRDDAEDEDGDRRLPP
LVDGGAVDRLGVDSAQHFTQPLPRYSEASLVKRLEELGIGRPSTYASIIEVLQDRGYVRL
DRKRFVPEDRGRLVTAFLTGFFDKLVQYNFTAEMETKLDAVSDGRVDWRQLLRDFWQDFS
TQIAQTKDLSIKDVVSALDEDLGRHFFPDTGEGGRDPRGCPTCGDGRLGLKLGKFGAFIG
CSNYPECRYTRPLAIENGDGSAGADGGDPNVPKKLGDDPDTGLPVWMRKGPYGQYVQLGD
AEGDTKPKRQSIPKGMPPGDVTLAVALSLLALPRTIGNHPETGDPIVAGIGRFGAYVKHG
PTYKSIGSGDDVLTIGLNRAVDLLASAPGRGRQPGRPIGDHPADGKPITVHAGKYGPYVQ
HGEIRATLPKGMDADAVSVAVALPLLAERAAKAPAKPAPRRRAAASDKAAAPARKAAAPK
KAAAKSAASADTATKAKPAAKKPAVKKAAAKPATAKAKPAAKAKAAPRKAAAKAEEQ
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgccagctatggccatgtccgcgacctgcccgccaaggacggctccgtcgacccc
gagcacgacttcaacatgctgtgggaagtcgacggccgctccgaaaagcacatgcgcgcc
atcgccgatgcggccaagggcgccaccaacctctatctggccaccgacccggatcgcgag
ggcgaggccatctcctggcacgtccgcgaggtgctggagcagcgccgcgccctgaagggg
gtggaggtccagcgggtcgtcttcaacgagatcaccaagtccgccatcgtcgaggcgttc
aagcatccccgtgccctgaaccgggagctggtcgacgcctacctggcgcgccgcgcgctg
gactatctggtgggctttaccctgtcgcccgtgctgtggcgcaagctgccgggcagccgg
tccgccggccgcgtgcagtcggtggcgctgcgcctggtgtgcgagcgcgaggccgagatc
gaggccttcaagccgcaggaatactggacggtggaggctaccttccagaccgaggaaggc
aaccgcttcaccgcccgcctgacgcacttggccggccgcaagctggaaaagctcgacatc
gccaacgcggccggggcggctgccgccgtggccgcggtcgaggcgcgcagcttccatgtc
ggcccggtcgagcgcaagcaggtgcgccgccacccgcagccacccttcacgacctcgacc
ctgcagcaggaagcctcgcgccagatcggcatgacggcgtcgcgcaccatgcgcaccgcc
cagcgcctctacgagggcgtggacatcggcggcgagacggtcggcctcatcacctacatg
cgtaccgacggcgtgcagatctcgggcgaggcgatcgcggctgcccggcgcctgatcggc
ggccgctatggcgagaagtacgttcccgatgcgccgcgggtctatcgcacccaggccaag
aacgcccaggaagcccatgagggcatccgcccgaccgacatgttccgcacccccgaccag
gtgtcgagccagctgtcggacgaagaacggcggctctacgagctgatctggcggcgcacc
gtcgccagccaaatggaaagcgcgctgctggagcaggtcggcgccgacctgttgagcggc
gaccgccaggtgacgctgcgggccaccggctccaccctgctgttcgacggcttcctcaag
ctctatcgcgagggccgcgacgacgccgaggacgaggatggcgaccgccgcctgccgccg
ctggtcgatggcggcgcggtcgaccggctcggcgtcgattccgcccagcatttcacccag
cccctgccgcgctacagcgaggccagcctggtgaagcggctggaggagctggggatcggc
cggccgtccacctatgcctcgatcatcgaggtgctgcaggaccgcggctatgtccggctc
gaccgcaagcgcttcgtgcccgaggaccgcggccggctggtcaccgctttcctcaccggc
ttcttcgacaagctggtgcagtacaatttcaccgccgagatggagaccaagctcgacgcg
gtgtcggacgggcgggtcgactggcgccagctcctgcgcgacttctggcaggatttcagc
acccagatcgcccagaccaaggacctgtcgatcaaggacgtggtctcggcgctggacgag
gacctgggccgccacttcttccccgataccggcgagggcgggcgcgacccgcgcggctgc
ccgacctgtggcgacggccggcttggcctgaagctcggcaagttcggcgccttcatcggc
tgctcgaactatcccgaatgccgctacacgcggccgctggcgatcgagaacggcgacggc
tcggccggcgcggacggcggcgacccgaacgtgcccaagaagctgggcgacgaccccgat
accggcctgccggtctggatgcgcaagggcccatatggccagtacgtgcaactgggcgat
gccgagggcgacaccaagcccaagcgacaatcgatccccaagggcatgccacccggcgac
gtcacgctggcggtcgccctctcgctgctggccctgccgcggaccatcggcaaccatccc
gagacgggcgacccgatcgtggccggcatcggccgcttcggtgcctatgtgaagcatggg
ccgacctacaaatcgatcggctcgggcgacgacgtgctgaccatcggcctcaaccgggcg
gtcgacttgctggcgagcgcgccgggccgcgggcgccagccgggccggccgatcggcgac
catccggccgacggcaagccgatcaccgtgcatgccggcaagtacggcccctatgtccag
catggcgagatccgcgccaccctgcccaaaggcatggatgcggacgcggtgagcgttgcc
gtcgccctgccgctactggccgagcgcgcggccaaggcgcccgccaagccggcaccgcgc
cgccgtgcagccgcgagcgacaaggccgccgcccccgcccgcaaggcagccgccccgaag
aaggcggctgccaagtctgctgcgtcggccgacaccgcaaccaaggccaagccggcagcg
aaaaagccggccgtcaagaaggctgccgcgaagcccgccacggccaaggcaaagccggcc
gccaaggccaaggccgccccgcgcaaagctgcggccaaggccgaggagcagtag
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