Streptomyces hundungensis: DWB77_02171
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Entry
DWB77_02171 CDS
T07388
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
shun
Streptomyces hundungensis
Pathway
shun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWB77_02171 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shun03019
]
DWB77_02171 (rnj)
Messenger RNA biogenesis [BR:
shun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DWB77_02171 (rnj)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF1161
Motif
Other DBs
NCBI-ProteinID:
AYG80047
UniProt:
A0A387HHE1
LinkDB
All DBs
Position
complement(2424445..2426130)
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AA seq
561 aa
AA seq
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MSHPHPELGTPPKLPKNGLRVTPLGGLGEIGRNMTVFEFDGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVVEGDRERLGPFDCEFIAVNHSIPDALAVAIRTPAGLAVATGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRNVFANADKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVPGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKN
HIVIAEDGVVVDLVDGTARIVGKVQAGYVYVDGLSVGDVTESSLKDRRILGDEGIISVYV
VVDSSSGKITSGPHIQARGSGIEDTAFGPVVAKIEEALNRSAQDGVVEPHQLQQLIRRSV
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcccgaactcggcaccccgccgaagcttcccaagaacggcctgcgc
gtcacaccgctcggcggtctcggcgaaatcggccggaacatgaccgtcttcgagttcgac
ggccgcctgctcatcgtcgactgcggcgtcctcttccccgaggaggagcagcccggcatc
gacctgatcctgccggacttcagctccatcagggaccgcctcgacgacatcgagggcatc
gtcctgacgcacggccacgaggaccacatcggcggcgtgccgttcctgctccgcgagaag
ccggacatcccgctgatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccgcatccgcccgtacacgctggaggtcgtcgagggcgaccgcgagcgcctgggc
cccttcgactgcgagttcatcgccgtcaaccactccatcccggacgccctcgcggtggcc
atccgcacccccgcgggcctggccgtcgccaccggcgacttcaagatggaccagcttccc
ctggacggccgcctcaccgacctgcacgccttcgcgcgtctgagcgaagagggcatcgac
ctcctcctctcggactcgacgaacgccgaggtccccggcttcgtgccgccggagcgggac
atctccaacgtcctgcgcaacgtcttcgccaacgccgacaagcggatcatcgtggccagc
ttcgccagccacgtccaccgcatccagcagatcctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgtgacctcggc
tacctgaaggtcccggccggcctcgtcgtcgacgtgaagacgctcgacgacctgccggac
gacgaggtcgtactggtctgcaccggttcgcagggcgaaccgatggccgcgctctcccgc
atggccaaccgcgaccaccagatccggatcgtcccgggcgacaccgtgatcctcgcgtcg
tcgctcatcccgggcaacgagaacgcggtctaccgcgtcatcaacggcctgacccgttgg
ggcgccaacgtcgtccacaagggcaacgccaaggtgcacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctgatgccggtccacggc
gaatggcgccacctgcgggcgaacgcggagctcggagcgctcaccggcgtcccgaagaac
cacatcgtcatcgccgaggacggcgtcgtcgtcgacctggtcgacggcaccgcgcgcatc
gtcggcaaggtccaggcgggttacgtctacgtcgacggcctctcggtcggcgacgtgacg
gagtcctccctcaaggaccgccggatcctcggcgacgagggcatcatctcggtgtacgtg
gtggtggactccagcagcggcaagatcaccagtggcccgcacatccaggcacgcggttcc
ggcatcgaggacacggcgttcggccccgtggtcgccaagatcgaggaagcgctgaaccgg
tccgcccaggacggcgtcgtcgagccgcaccagctccagcagctgatccgccgttcggtc
ggcaagtgggtctcggacacctaccgcaggcgtccgatgatccttcccgtggtcgtcgag
gtctga
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