Streptomyces hundungensis: DWB77_02581
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Entry
DWB77_02581 CDS
T07388
Symbol
ligD_2
Name
(GenBank) Multifunctional non-homologous end joining DNA repair protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shun
Streptomyces hundungensis
Pathway
shun03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DWB77_02581 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shun03400
]
DWB77_02581 (ligD_2)
Enzymes [BR:
shun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DWB77_02581 (ligD_2)
DNA repair and recombination proteins [BR:
shun03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DWB77_02581 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
NAD_binding_2
DapB_N
Motif
Other DBs
NCBI-ProteinID:
AYG80446
UniProt:
A0A387H9D9
LinkDB
All DBs
Position
2897557..2898441
Genome browser
AA seq
294 aa
AA seq
DB search
MTPITEVEGRRVALSNLDKVLYPATSTTKGELLHYCASVAGPFLAQLDDRPVSFLRFPDG
PGGQRFFTKNPPPSTPTWVKTAEVPRTEDKAARQVVVSDLATLMWAANLVVEFHTPQWRA
AAPGLADRLVLDLDPGEPASIVECCAVARWLRDRLAADGLSAYAKTSGSKGLHLLSALEP
TPSAQVSAYAKKLAREAEAALAGLVTHKMAKALRPGKVFVDFSQNAAAKTTATPYTVRAK
DRPTVSAPVSWEEVEACTDPADLTFLITDIAPRLERDGDLLAPLFDPAGAGRLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcacggaggtggaggggcggcgggtggccctgtcgaatctggacaaggtg
ctgtacccggccaccagcaccaccaagggcgagctgctgcactactgcgcctcggtcgcg
ggcccgttcctggcccagctcgacgatcgccccgtgtcgttcctgcgcttccccgacggt
ccgggcggccagcgcttcttcaccaagaatccgccgccgtccacccccacctgggtgaag
accgccgaggtgccgcgcaccgaggacaaggcggcccgccaggtcgtggtgtcggacctc
gccaccttgatgtgggccgcgaacctggtggtggagttccacaccccgcagtggcgggcc
gcggcgccgggtctcgccgaccggctcgtgctcgacctcgaccctggggagcccgcgagc
atcgtcgagtgctgcgcggtggcgcggtggctgcgggaccggctcgcggcggacgggctg
agcgcttacgccaagacgtcgggttccaaggggctgcacctgctctctgcgctggagccg
accccctccgcgcaggtctcggcgtacgcgaagaagctggccagggaggcggaggcggcg
ctcgcgggcctggtcacgcacaagatggcgaaggcgctgcggccggggaaggtgttcgtc
gacttcagccagaacgcggccgcgaagacgacggcgacgccgtacacggtgcgcgccaag
gaccgtccgacggtgtcggctccggtgtcctgggaggaggtcgaggcgtgtacggaccct
gccgacctgacgttcctgatcaccgacatcgccccccgtctggagcgggacggcgatctg
ctcgcgcccctcttcgaccccgcgggggcgggtcggctgccatga
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