Streptomyces hundungensis: DWB77_03390
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Entry
DWB77_03390 CDS
T07388
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
shun
Streptomyces hundungensis
Brite
KEGG Orthology (KO) [BR:
shun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shun03016
]
DWB77_03390 (rtcB)
Enzymes [BR:
shun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DWB77_03390 (rtcB)
Transfer RNA biogenesis [BR:
shun03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DWB77_03390 (rtcB)
Prokaryotic type
tRNA splicing ligases
DWB77_03390 (rtcB)
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Paralog
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GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AYG81248
UniProt:
A0A387HKF9
LinkDB
All DBs
Position
complement(3784322..3785515)
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AA seq
397 aa
AA seq
DB search
MSYVEMPGARVPIRMWTDPGSIDEGAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
ALHGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHRDPVDPT
RLHGFPTSGWEGFWERFGGIAESVRFREERAAKQMGTLGSGNHFVEFCLDEEGTVWLMLH
SGSRNIGKELADFHIGQAQKLPHNQNLVDRDLAVFVADTPQMAAYRGDLFWAQEYAKYNR
AIMMALFQDVVRKEFKKARVTFEPVISCHHNYVAEERYDGMDLLVTRKGAIRAGAGEFGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRRMSRSAAKRAFSTRDLVEQTRGVECRKDAG
VVDEIPGAYKPIEKVMDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagatgccgggcgcacgggtgcccatcaggatgtggaccgacccgggg
tcgatcgacgagggcgcgatgcagcagctgcgcaacgtcgcgacgctgccgtggatcaag
ggcctcgccgtgatgccggacgtccactacggcaagggcgccaccgtcggctcggtcatc
gccctgcacggcgcggtgtgtccggccgcggtcggcgtcgacatcggctgcgggatgtcc
gcggtgaagacctcgctgaccgccaacgacctcccgggtgacctctcccggctccgctcg
aagatcgaacaggccatcccggtgggccgcggcatgcaccgcgacccggtggacccgacc
cggctgcacggctttcccacctcggggtgggaggggttctgggagcggttcgggggcatc
gcggagtcggtgaggttccgcgaggagcgggccgcgaagcagatggggacgctcggttcg
ggcaaccacttcgtcgagttctgcctggacgaggagggcacggtctggctgatgctgcac
tccggttcgcgcaacatcggcaaggagctcgcggacttccacatcgggcaggcgcagaag
ctcccgcacaaccagaacctggtcgaccgcgacctggcggtcttcgtcgcggacaccccg
cagatggcggcctaccggggcgatctgttctgggcgcaggagtacgcgaagtacaaccgg
gccatcatgatggcgctcttccaggacgtggtccgcaaggagttcaagaaggccagggtc
accttcgagccggtcatctcctgccaccacaactacgtggccgaggagcggtacgacggc
atggacctgctggtcacccgcaagggcgcgatccgggcgggcgccggcgagttcgggatc
atcccgggctcgatgggcacgggctcctacatcgtcaagggcctcggcaacgccgcgtcc
ttcaactcggcctcgcacggcgcgggccgcaggatgagccggagcgctgcgaagcgggcg
ttctcgacgcgggacctcgtcgagcagacgcggggcgtggagtgccgcaaggacgcgggc
gtggtggacgagatccccggcgcctacaagccgatcgagaaggtcatggaccagcagcgc
gacctggtggaggtcgtcgcgaagctcaagcaggtggtgtgcgtcaagggttga
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