Streptomyces hundungensis: DWB77_05097
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Entry
DWB77_05097 CDS
T07388
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
shun
Streptomyces hundungensis
Pathway
shun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWB77_05097 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shun03019
]
DWB77_05097 (rne)
03009 Ribosome biogenesis [BR:
shun03009
]
DWB77_05097 (rne)
Enzymes [BR:
shun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DWB77_05097 (rne)
Messenger RNA biogenesis [BR:
shun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DWB77_05097 (rne)
Ribosome biogenesis [BR:
shun03009
]
Prokaryotic type
rRNA processing factors
DWB77_05097 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AYG82907
UniProt:
A0A387HQF8
LinkDB
All DBs
Position
5699046..5703209
Genome browser
AA seq
1387 aa
AA seq
DB search
MLEQNESGTTRDNDQNSPSDTLPPRRRRRAASRPAGPPVGATPAEQATEPTAGTAELAAP
AAEQSEAPAPRARRRATRKATAPAGAPQAAEEIVEATAAPVAAEASAPAADEPEAPAPRA
RRRATRKATAPAGAPQSAEEIVEAAPAAVAEAPESVSGNVEEASEAPAPRARRRATRKAT
APAGAPQAAEEIVEAAPAAVAEAPESVSGNVEEASEAPAPRTRRRATRKATAPQTTVAAP
AAEIVVADELDEDEEAQESAEAVAEAPVAEEPAAAPAPRTRRRATRQATAPAGAPQAAPE
EPAAPEEPARVETPAAAQDDAPRGRTRRRAARPVSTPQFTPVEPEPQPAPQAEEPATGRS
RGAKGQSASGRRRATRPAVAVFQAPVFTEPMFQTPETAAAAAAAARVEEPEETEPTSVEA
VETFEAPEPAAEPQGRSRRRRRRGEAAEPAQDKAVDEPVDEHVEEPAEAEAETESEDADD
DRPSRRRRRGGRRRRRGEPTEAEDAAEEHPDEQADQAEGAESDEDDDEHDEHEHEDEDGT
PSAAGTSSSRRRRRRRRRSGDSGPDGEQGPDDPERTVVKVREPRPVRERMDALTSSSSDE
VQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGV
LEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFESL
GMGNGPRRIEAALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRK
LPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWADIQKKANQIST
SSPSLLYGEPDMTVRVVRDIFNEDFTKVIVSGDEAWETIHGYVQHVAPDLTERLSRWTSE
VDVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR
NNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS
LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSVGGGTGKRAKKRGRGGAEHD
QHTHEHEHDVVDAELVEPEDVETEAVESEAEVAAEIAAPIALAEPEFVPDEELYGSVAEA
EAAARGGRGRGGRGQQGATARRRATRKASAPAGAPRTAAAEAPQAPAAVVEEPEAEQAPA
AVTVASFIEDDAPRGRTRRRATRKVSAPAGAPASAVAEPVVVVTVPEPKAEEPAREPAAE
PVASVAPAAEEAPVAAPPRARRRATRKATAPAGSPSGAEEAAIVVVEAAPAAERTGSTEP
SEPVSAPVSESAESAEEGAPAKKAARKTAKKATAKKAATKKTAAKKTAAKKTTAKKATAK
KTAAAEQ
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgcttgagcagaacgaatccggtaccacccgggacaacgaccagaacagccccagcgac
acgctgccgccgcgccgcaggcgccgcgcggcgtcgcggcccgcggggccgccggtgggt
gcgacacccgccgagcaggccaccgagccgacggcggggaccgccgagttggccgcgccc
gccgccgagcagtccgaggcccccgcgccgcgtgcccgtcgccgtgcgacccgtaaggcg
acggctccggccggtgcgccgcaggccgccgaggagatcgtggaggccactgcggccccg
gtcgccgccgaggcatccgcgcccgccgccgatgagcccgaggctcccgcgccgcgtgcc
cgtcgccgtgcgacacgtaaggccaccgctccggctggtgcgccgcagtccgccgaggag
atcgtggaggccgccccggccgccgtcgccgaggcgccggagagcgtgtccgggaacgtc
gaggaggcctccgaggcccccgcgccgcgtgcccgtcgccgtgcgacccgtaaggcgacg
gcccctgctggtgcgccgcaggccgccgaggagatcgtggaggccgccccggccgccgtc
gccgaggcgcccgagagcgtgtccgggaacgtcgaagaggcctccgaggcccccgcaccg
cgtacccgccgccgcgccacccgcaaggcgaccgcgccgcagaccaccgtcgcggccccc
gccgccgagatcgtcgtcgccgacgagctcgacgaggacgaggaggcgcaggagagcgcc
gaggccgtcgccgaggcccccgtcgccgaggagcccgccgcggctccggcgccccgcacc
cgccgccgcgccacccgccaggccaccgcacccgccggcgcgccccaggccgcgcccgag
gagcccgccgcgcccgaggagccggcccgggtcgagaccccggccgccgcccaggacgac
gcgccgcgcggccgcacccgccgccgcgccgcccggcccgtgtccaccccgcagttcacc
cccgtcgagccggagccgcagcccgcgccgcaggcggaggagcccgccacgggccgcagc
cgcggcgccaagggccagagcgcgtccggccgtcgccgcgccacgcgccccgccgtcgcc
gtcttccaggcgccggtcttcaccgagcccatgttccagaccccggagacggccgcggcc
gccgctgccgccgcccgcgtcgaggagcccgaggagaccgagccgacctccgtcgaggcc
gtcgagaccttcgaggcacccgagccggccgccgagccgcagggccgctcgcgccgtcgc
cgccgccgtggcgaggccgccgagcccgcgcaggacaaggccgtcgacgagcccgtggac
gagcacgtcgaggagccggccgaggccgaggccgaaacggagtccgaggacgccgacgac
gaccgcccctcgcgccgccgtcgccgtggtggccgccgccgtcgccgcggtgagcccacc
gaggccgaggacgccgccgaggagcaccccgacgagcaggccgaccaggccgagggcgcc
gagtccgacgaggacgacgacgagcacgacgagcacgagcacgaggacgaggacggcacg
ccgtccgcggccggaaccagcagcagccgtcgccggcgccgccgccgtcgccgctcgggc
gactcgggccccgacggcgagcagggccccgacgacccggagcgtacggtcgtcaaggtc
cgcgagccgcgcccggtgcgcgagcgcatggacgccctcacgtcctcctcctccgacgag
gtccagtccatcaagggctcgacccgtctggaggccaagaagcagcgccgccgcgagggc
cgcgagcagggccgccgccgcgtcccgatcatcaccgaggccgagttcctggcccgccgc
gaagccgtcgagcgcgtcatggtcgtccgccagagcggcgagcgcacccagatcggcgtc
ctggaagacgacgtgctcgtcgagcactacgtcaacaaggagcaggccacctcgtacgtc
ggcaacgtctacctgggcaaggtccagaacgtgctgccgtccatggaggccgcgttcgtc
gacatcggcaagggccgcaacgccgtcctgtacgccggcgaggtcaacttcgagtcgctc
ggcatgggcaacggcccgcgccgcatcgaggccgccctcaagtccggccagtcggtgctc
gtccaggtcaccaaggaccccatcggccacaagggcgcccgcctgaccagccaggtctcg
ctgcccggccgctacctggtctacgtgcccgaaggctcgatgaccggcatcagccgcaag
ctgcccgacaccgagcgcgcgcgtctgaagaccatcctaaagaagatcgtccccgaagac
gcgggcgtcatcgtgcgcaccgccgccgaaggcgccagcgaggacgagctgcgccgtgac
gtcgagcgcctccaggcgcagtgggccgacatccagaagaaggccaaccagatctcgacg
tcctcgccgtcgctgctctacggcgagccggacatgaccgtccgggtcgtccgcgacatc
ttcaacgaggacttcaccaaggtcatcgtcagcggtgacgaggcgtgggagaccatccac
ggctacgtccagcacgtcgccccggacctcaccgagcggctttcccgctggaccagcgag
gtcgacgtcttcgcgacgtaccggatcgacgagcagctcgccaaggccctggaccgcaag
gtctggctgccctccggcggctcgctggtgatcgacaagaccgaggcgatgatcgtcgtc
gacgtcaacaccggcaagttcaccggccagggcggcaacctcgaagagaccgtgacgagg
aacaacctcgaagcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggc
atcgtggtcatcgacttcatcgacatggtcctggagtccaaccgcgacctcgtcctgcgc
aggctgctcgaatgcctgggccgtgaccgcaccaagcaccaagtggccgaggtcacctcg
ctcggcctggtccagatgacgcgcaagcgcgtcggccagggcctgttggagtccttctcc
gagacctgcgtccactgcaacgggcgcggcgtgatcgtgcacatggagcagccgacctcg
gtcggcggcggcaccggcaagcgcgcgaagaagcgcggccgcggcggcgccgagcacgac
cagcacacccacgagcacgagcacgacgtcgtggacgccgagctcgtcgagcccgaggac
gtcgagacggaggccgtcgagtccgaggccgaggtcgccgcggagatcgcggcgccgatc
gcgctcgccgagcccgagttcgtgcccgacgaggagctgtacggaagcgtcgccgaggcg
gaagccgccgcgcgcggcggacgtggccgaggcggccggggtcagcagggcgccaccgcg
cgccgccgtgccacccgcaaggcctcggctccggccggtgcgccccgtacggccgccgcg
gaggccccgcaggccccggccgcggtggtcgaggagccggaggccgagcaggctccggcg
gcggtgacggtcgcctcgttcatcgaggacgacgcgccgcgcggtcgtacccgtcgccgc
gccacccgcaaggtgtccgccccggccggcgcgccggcctcggccgtcgccgaaccggtg
gtggtcgtcaccgtgcccgagccgaaggccgaggagccggcgcgggagccggcggccgaa
cccgtcgcgtccgtcgcgcctgccgccgaggaggcgcccgtcgccgccccgccgcgtgct
cgccgccgtgcgacccgcaaggcgacggccccggccggttcgccgtcgggcgccgaggaa
gccgcgatcgtcgtcgtggaggccgccccggcggccgagcggaccgggtcgacggagccg
tccgagccggtgtccgcgccggtgtccgagtcggcggagtccgccgaggagggcgcgccg
gccaagaaggcggcccgtaagacggcgaagaaggccaccgcgaagaaggccgccacgaag
aagacggcggccaagaagaccgcggcgaagaagacgaccgccaagaaggccacggccaag
aagacggcggcggcggagcagtag
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