Salinicoccus halodurans: AAT16_02505
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Entry
AAT16_02505 CDS
T03940
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shv
Salinicoccus halodurans
Pathway
shv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAT16_02505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shv03019
]
AAT16_02505
03400 DNA repair and recombination proteins [BR:
shv03400
]
AAT16_02505
Enzymes [BR:
shv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAT16_02505
Messenger RNA biogenesis [BR:
shv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAT16_02505
DNA repair and recombination proteins [BR:
shv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AAT16_02505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
AKG73187
UniProt:
A0A0F7HJG5
LinkDB
All DBs
Position
485661..487451
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AA seq
596 aa
AA seq
DB search
MRNILKQYFGFDKFRPKQEEIINSVMAGKNTLGILPTGSGKSLCFQVPGLKYPGLTLVIS
PLISLMRDQVEALNSQGIPAAYLNSTLKKKEIDSLMVDLEAGHYQFLYVAPERFNSEEFN
ALIRRLDVPLIAFDEAHCISKWGHDFRPSYQSIIPILKKLLPDAVTIGLTATATLEVQEN
IQELLGIETENVFTTSVARENLHLSVNRTYQREQFILSYIQKRSDVSGIIYAATRAEVEK
ISLFLKDNGVDNVIYHGGLGKGERNGNQQQFVSGEKDIAVATNAFGMGIDKPDIRFIIHH
NLPGDIESYYQEIGRAGRDGAVSECILLSSPRDVNLHQFFIDRSSSSDQYKDHMRAKLDR
MIQYSRTSKCLSSFITKYFDPDEYVEECLTCSNCKNPERVYDMTSEAAVIVELVEVCELP
LTREQIIQVLRGEQSENITSHSLEELESFGRMENYLTGEISHVLEELIFRGWLHIEEELL
YTVPRSEAVLSGEAVLKTVPFRKHFNEKVDVSTASSPNELFFRKLTETRKALAEKYEVHE
EDIFTDATLREFAKKMPGSKQDMVTIQGVGSYKLKHYCPHFLETIRSHKEGVFVTE
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagaaatattctaaaacagtattttggattcgataaatttagaccaaaacaggaagag
atcatcaattcggtgatggcagggaagaacacgctaggaatacttccgacggggtcgggg
aaatcactctgtttccaggtcccggggctgaagtaccctggccttactctggtgatctcc
ccgctgatttctttgatgcgggatcaggtcgaggcgttgaacagtcagggcattcccgca
gcatacttgaactcgacgctcaagaaaaaggaaattgattccctgatggtggatctggaa
gcaggacattaccagttcctgtatgtcgctccggaaaggttcaacagtgaagaattcaat
gcactgatcagacgccttgacgtgccattgattgcatttgacgaagcgcactgtatttcc
aaatggggacatgacttcagaccgagctaccagagcatcataccgattctgaaaaagctt
ctgccggatgcggtgaccatcggactaacagccactgccactctggaagtccaggaaaac
atccaggaactcctcgggatagaaactgaaaatgtctttactacaagcgttgcaagggag
aatctccatctaagtgtgaacaggacatatcagagggaacagttcatcctctcctatata
cagaagcggtctgatgtctcgggaatcatatatgccgccacccgggcggaagtggagaag
atatcgttattcctaaaagacaacggtgtggataacgttatttatcacggtggtctcggc
aagggagaacgtaacggcaaccagcagcagttcgtatcaggtgagaaggatatcgctgtt
gcaacgaacgccttcggcatggggatcgataagccggacatccgttttatcatccaccat
aatctgccgggggatatcgagagctattatcaggagattggccgtgccgggcgtgatggg
gcagtgagtgaatgcatactgctgtccagtccgcgtgacgtcaacctgcatcagttcttc
atcgaccggtcgagctcctcagaccagtataaagatcatatgagggcaaagctcgacaga
atgatccagtacagccggaccagcaaatgtctgagcagtttcatcacaaaatatttcgat
ccggatgaatatgtggaggaatgcctgacgtgctccaactgtaaaaatcccgaacgggtc
tatgacatgacatcggaagcagcagtcatcgtggaactggtcgaagtctgcgagcttcca
ttgaccagggagcagatcatccaggtgctgaggggcgagcagtcggaaaacatcacatcg
cacagcctggaggaattggagtcattcggcaggatggaaaattacctgacgggcgaaatc
agtcacgtgctggaagaattgattttcaggggctggctccacattgaagaggaactttta
tatactgtcccgaggagtgaagcggtattgagcggggaagcagtcctcaagactgtaccg
ttccgcaaacacttcaatgaaaaagtggatgtcagtacggcgtcttcgccgaatgagctg
ttcttccggaaacttacggagacccggaaggcactcgcagagaaatatgaagtgcatgaa
gaggacatctttacggatgcgacactcagggaatttgctaaaaagatgcccggatccaaa
caggacatggtgaccatccagggtgtcggaagctacaagctgaagcattactgtccgcat
ttccttgaaacaatccgttcacataaagaaggggtctttgtgacggaataa
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