Salinicoccus halodurans: AAT16_12580
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Entry
AAT16_12580 CDS
T03940
Name
(GenBank) hypothetical protein
KO
K03092
RNA polymerase sigma-54 factor
Organism
shv
Salinicoccus halodurans
Pathway
shv02020
Two-component system
shv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shv00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AAT16_12580
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AAT16_12580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shv03021
]
AAT16_12580
Transcription machinery [BR:
shv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AAT16_12580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
HTH_Crp_2
Sigma54_AID
HTH_3
HTH_26
HTH_IclR
MarR_2
HTH_31
Motif
Other DBs
NCBI-ProteinID:
AKG74948
UniProt:
A0A0F7HP49
LinkDB
All DBs
Position
2475305..2476498
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AA seq
397 aa
AA seq
DB search
MINLDTFVANELGISLNNFIYNSISIFKYDTHELTDYIKNKCDENPLIYISEDRIPLSAL
SDHYQTQSTGIFTELFTHFNCTLDEQKKTAMQYILYSLNSSGFLEADTKTVSDMTGSSPE
EVQGLLNMLKAYDDRKGIGCTDVYDFLRFQLRNQDMYNEKLFTLFISNLDAINSGALDFL
EDDERADLLEYVRLITESCSLSPISEDEPEYLEPDATISVENRSFNIVINDYLSDCIVFE
PLDIQSQDKDFKKEMEKYRRDYEELASILNARKMYLSSVLTIIVNKQRDFLLGTSEFLNP
LDQNDLADATSLSPATISRLLAGKFVSSPKGTVPIKSLLSKKCCNGASVSYAMHLIKSLS
DFETMPDSKISKKLCEFGVTLSRRTVNKYKNEILSQN
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgataaaccttgatacatttgttgcgaatgaacttggtatttcgttgaataatttcatc
tacaattccatcagtatttttaagtatgacacgcatgaactcaccgactatattaaaaat
aaatgtgatgagaaccctctgatctacataagcgaagataggattcctctctcggcttta
tccgatcactatcagactcaatcgaccggcattttcactgagttgttcacccatttcaac
tgtaccctcgatgaacagaagaagacagcgatgcagtatattctttattcccttaattca
tctggctttttggaagcggatacaaaaactgtttctgacatgaccggttcttcgcccgaa
gaggtacaaggactactgaatatgctgaaagcctatgatgaccgtaaaggaatcggctgc
acggatgtttacgattttcttagattccagctgagaaatcaggacatgtacaatgaaaaa
ctgttcacgctgttcatctcaaacctcgatgcgatcaacagcggcgccctcgatttcctg
gaggatgatgaaagagcagatctgctcgagtatgtccggcttattactgaatcctgctcc
ctctcccccatctcggaggatgaacctgaatatctggaaccagatgcaacgatctcagtt
gaaaatagatcattcaatattgtcatcaatgattatctttcagactgcatcgtattcgaa
cctttggatattcagtcacaagataaggatttcaaaaaggaaatggagaaatacaggcgg
gattatgaagaactggcttcaattctgaacgcccggaaaatgtatctgagcagtgtgctg
accatcattgtgaataagcagagggacttcctgttgggaacttcagaatttttaaacccc
ctggatcagaatgacctggccgatgcgacttccctcagcccagcgacaatcagccgcctg
cttgcgggtaaattcgtgtcgtctccaaaagggactgtcccgatcaagtcactcctgtcg
aaaaaatgctgcaacggtgcttctgtcagctatgcaatgcacctgattaaaagcttatct
gacttcgaaacgatgccggacagtaaaatttcaaagaaactgtgtgaattcggcgtcacc
ctttccagaagaacagtgaataaatataaaaatgagatattaagtcaaaattaa
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