Shewanella sp. W3-18-1: Sputw3181_0109
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Entry
Sputw3181_0109 CDS
T00453
Name
(GenBank) RNA binding S1 domain protein
KO
K06959
protein Tex
Organism
shw
Shewanella sp. W3-18-1
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99973 Transcription
Sputw3181_0109
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Tex_central_region
Tex_YqgF
Tex_N
HHH_3
HHH_9
S1
YqgF
HHH_7
S1_RRP5
T2SSK
PsbU
HHH_6
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABM22962
UniProt:
A0A6N3J003
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Position
133702..136143
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AA seq
813 aa
AA seq
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MKLIMRLWYRGRNYDSSVKHDILFMQTTSQTIAHNIAQIIAQELNVREQQVTATIALLDD
GATVPFVARYRKEATGGLDDTQLRTLHSRLAYLRELNDRRQVILSSIQAQGKLTAELQFA
IDSADSKTRLEDLYLPFKPKRRTKGQIAIEAGLEPLADALLADRNADTEALAADYINENA
GFADTKAVLEGARYILMERYAEDAELLRKVREHLSQNSVLESRVIAGKEKEGAKFRDYFE
HNELLSKVPSHRALAMLRGRNEGFLSLSMNADPNAQAGQGSYCEVIIADHLGLKLGDSSV
DQWLKTVVTATWRIKIALQMETEFISQMRERAEAEAIKVFARNLGDLLMAAPAGAKATMG
LDPGLRTGVKVAVVDNTGKLLSHATIFPHAPQNLWEKSIRTLANLVNMHKVELIAIGNGT
ASRETDKLAAELIASLTDTHPHLTKVMVSEAGASVYSASELAALEFPELDVSIRGAVSIA
RRLQDPLAELVKIEPKSIGVGQYQHDVSQSQLSSSLEAVVEDCVNGVGVDLNMASVPLLS
QVAGLNKTLAKNVVDYRDANGQFKNRKELLKVPRLGPKAYEQAAGFLRIREGDNPLDMSA
VHPEAYSLVETIAKAKQVELASLIGNSELLRTINAQEFITPEFGLPTVTDILAELDKPGR
DPRGEFKTAKFKEGIEELKHLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKF
ISDPHTVVKAGDVVKVKVMEVDVERRRIGLSMRLDEAIDQNNAQVKHSSQTKANHKLTSS
GKTARPAQKPAPKAPANAAMGNAFADAFAKLKK
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgatcatgcgcctgtggtatcgtgggcgcaattacgactcatccgttaaacac
gatattttatttatgcaaacgacttcccaaaccattgcacataacatcgctcaaatcatt
gcccaagaactgaatgttcgtgagcagcaagttaccgcgaccatagcattgctcgacgat
ggggctaccgttccttttgtggcgcgctaccgtaaagaagctaccggtggcttagatgat
acccaattacgtaccctacatagtcgtttagcctatctgcgagagttgaacgatagacgc
caagtgattttgtccagtattcaggctcaaggtaaattaaccgcagagctgcaatttgct
attgatagtgccgacagtaagactcgcctcgaagatctctatttacccttcaaacctaag
cgccgtactaaagggcaaatcgccattgaagcgggtcttgaaccattagccgatgcactg
cttgcggatcgcaatgccgataccgaagcgctggctgcggattatatcaatgaaaatgct
ggttttgccgatactaaagccgtgctcgaaggtgcccgttatattttgatggaacgctat
gccgaagatgcggaactattgcgcaaagtgcgtgagcatttaagccaaaacagcgtatta
gaaagccgtgtgatcgcgggtaaagaaaaagagggcgctaagttccgtgactatttcgag
cacaatgagttgttatctaaagtgccgtcacaccgcgctttagctatgttacgtggtcgc
aatgaaggctttttatccttatcaatgaatgccgaccctaatgcacaagcaggtcaaggc
agttactgtgaagtgattattgctgaccacttaggcctaaaactgggtgatagcagtgtt
gaccaatggttaaaaaccgtagtgacggcaacatggcgcatcaagatagccctgcaaatg
gagaccgagtttatttcgcaaatgcgtgaacgtgctgaagccgaagccattaaggtcttt
gcccgtaacttgggcgatttactgatggcggcccccgctggtgcaaaagccaccatggga
ctcgatcctggtttacgtactggtgttaaagtggctgtggtggataatacgggtaagctc
cttagccatgcgacaattttcccccatgcaccgcaaaatttatgggaaaaatcgattcgt
actttagccaaccttgtgaatatgcataaggttgaactgatcgcaattggtaacggtacc
gcctcccgcgaaaccgacaaacttgccgctgaattaattgccagccttacggacactcat
ccacatttaactaaggtgatggttagtgaagcgggtgcctcggtttattctgcttcagaa
ttagcggcgctagaatttcctgaactcgatgtctctattcgcggcgcagtttctatcgcc
cgccgtctgcaagatcctctggctgagttagtgaaaattgagcctaagtctatcggagtc
ggtcaatatcagcatgatgttagtcaaagccaattatctagctcgcttgaagccgtagtc
gaagactgtgtaaacggtgtgggtgttgatttgaatatggcctcagtgccgttattgtcg
caagtcgctggtttaaataagaccttagcgaaaaatgtggtcgattaccgtgatgccaat
ggtcagtttaaaaaccgtaaagagctacttaaagtgcctcgtttagggccaaaggcttat
gagcaagccgcgggttttttacgtattcgtgaaggagataatccgctcgatatgtctgcc
gtgcatccagaagcttattcgctggtggaaaccatagccaaagctaaacaggttgaatta
gcgagtcttattggtaactcagaactgttacgaacgattaatgcacaggagtttatcacg
ccggaatttggtctccctaccgtgaccgatattttagccgagctggataaaccgggacgc
gatccccgcggtgagtttaaaaccgctaagtttaaagaggggattgaagaacttaagcat
ctcaaacccgaaatgatcctcgaaggtgtagtgacgaacgtgactaactttggtgccttt
gtcgatatcggtgtgcatcaagacggtttagtccatatttcttcattgaccgacaaattt
atcagcgatccccacacagtggtgaaagcgggtgatgtggtgaaggttaaagtgatggaa
gtggacgttgagcgccgtcgtattggtttgagtatgcgtttggacgaggcgattgatcaa
aacaatgctcaggttaagcattcatcgcaaaccaaagccaatcacaaattgacttcgtca
ggtaaaaccgctcgcccagctcaaaagcccgcgccgaaagcgcccgcgaatgcggctatg
ggtaacgcttttgccgatgctttcgctaaactgaaaaagtaa
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