Shewanella sp. W3-18-1: Sputw3181_0181
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Entry
Sputw3181_0181 CDS
T00453
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
shw
Shewanella sp. W3-18-1
Pathway
shw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sputw3181_0181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shw03021
]
Sputw3181_0181
03400 DNA repair and recombination proteins [BR:
shw03400
]
Sputw3181_0181
Enzymes [BR:
shw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sputw3181_0181
Transcription machinery [BR:
shw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sputw3181_0181
DNA repair and recombination proteins [BR:
shw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sputw3181_0181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
ABM23034
UniProt:
A1RED9
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All DBs
Position
202545..203534
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVNSTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVTIEGKDEAMLTLSKSGAGPVIAADITHDGD
VTIVNPDHVICHLTGNNDISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEPE
LKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLADDL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttcttaaaccgcgtctcgttgatatcgagcaggttaac
tcaacacgtgccaaggttacattggaaccacttgagcgtggtttcggccacactttaggt
aacgcgttgcgtcgcatcctattgtcgtctatgcccggctgcgcggttaccgaagtcgag
attgacggtgtactgcacgaatacagcagtaaggaaggcgtacaagaagatatccttgag
atcttgttaaacctgaaagggttagcagtgactatcgagggtaaagacgaggctatgctt
acgttgagcaagtccggcgcaggccctgtcatcgcagcagatatcacgcatgatggtgat
gtcactatcgtgaatcctgatcatgttatctgtcatttgacgggtaacaatgatatcagc
atgcgtattcgcgttgagcgtggtcgtggttatgtgccagcatctgctcgtgcacagacc
gaagacgatgatcgcccaatcggccgtttgctggttgatgcttctttctcgccagttgca
cgtattgcctacaatgtagaagcagctcgtgttgaacagcgtactgacttggataaactt
gttatcgatatgaccactaatggtactatcgatcctgaggaagctatccgtcgttccgca
actattttagctgaacagctagatgcgtttgttgagctgcgtgacgtgactgagccagaa
ttgaaagaagagaagccggagttcgatccgattctgttgcgtcctgtcgacgatttagag
ctaactgtacgttcggctaactgcttgaaagccgaagcgattcattacatcggagatctg
gtacagcgtactgaagttgagctgctgaagacccctaacttaggtaagaaatctcttaca
gaaattaaggacgttttggcttctcgcggactgtcgttaggtatgcgtttggaaaactgg
cctccagccagtttagcagacgacctataa
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