Shewanella sp. W3-18-1: Sputw3181_0316
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Entry
Sputw3181_0316 CDS
T00453
Name
(GenBank) sigma-54 factor, interaction domain-containing protein
KO
K12266
anaerobic nitric oxide reductase transcription regulator
Organism
shw
Shewanella sp. W3-18-1
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shw03000
]
Sputw3181_0316
Transcription factors [BR:
shw03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sputw3181_0316
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA
AAA_5
MCM
Mg_chelatase
AAA_22
AAA_16
bpMoxR
RNA_helicase
nSTAND3
AAA_30
AAA_7
ATG5_HBR
Motif
Other DBs
NCBI-ProteinID:
ABM23167
UniProt:
A0A6N3J0E9
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Position
340971..342656
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AA seq
561 aa
AA seq
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MMESSFGGSLNDEVDIMEFRVINFSEEKSPKDLAPYWHQVSLESTQQTVSFTPYISDIIS
QAVMSEWKQALALIVGSENIKELAKKYSDFMPWVENIAEKGPEAVLQNEHNLFSGLYITD
RYDVAQDRNFVSQARAILARKTVFLLPDSSPSNSVLHRADERNVFIRSFSALLSAGNTSI
ALAKSGYKTSGDSSIFNAVLASLFARNSQLRLDEDTGIHIKPGPLLIEGDTGTGKSAAAK
HLSMKMGKTMVEINLAAVSETLLETRMRGSSIGAFTGATNKKGFFEEADNGVLFLDELQS
ANLASQTQLLDLLSAISNDVWISKVGDDAAKKKFNVKVVLAVNEPVSRLLAEGRLRPDLF
HRIRDVVKFKSLNELFAQENGQAFLTQILTFYRWKSLELPAFSTDGKAKQVLSQIFIIYE
DGVLEKIMRAPWPGNFRQLERFAWDLFFVLGESVVVTNDLIERLLREENSRIPSAFIEAV
PIQSEQTVSKIFSEVETIIKKHHFNMAAARQELGIYNLKSPPALRGFILRNKEQFSEGFL
ADSAITKIFTEAALERKTGAE
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgatggaatcatcatttggtggttcactaaatgatgaagtcgatataatggaatttagg
gttatcaattttagcgaagaaaaatcccccaaggatttggctccttattggcatcaagtc
agcctggaatctacccaacaaacggtttcgtttacaccgtatattagcgacatcatttca
caggccgtgatgagtgaatggaagcaggcgctggcattgatcgtaggcagtgaaaatatc
aaagagctggcaaagaagtactcagactttatgccctgggttgaaaacattgcagagaag
ggacctgaggctgttttgcaaaatgaacataacctcttttctggcttatatataacagat
aggtacgacgtggcccaggaccgcaattttgtcagccaggcgcgagctatcttggcgcgc
aaaacggtctttttgttgccagatagctcgccgtcgaactcagtgctgcatcgtgcggat
gagcgtaatgtatttatacgctcgttttcagcattacttagcgcggggaatacctctatc
gcactggcaaaatccggttataaaaccagtggtgatagttctatttttaacgccgtgcta
gcgtcactttttgccagaaattcgcagctaaggttagatgaagatacaggcattcacatc
aagcctggccccctacttattgagggggatactggtacagggaaaagcgctgcggctaaa
catctgtctatgaagatgggtaaaacaatggttgagattaaccttgccgccgtcagtgaa
acattgctggaaacccgtatgcggggctcgtcaataggggcatttactggtgcgactaac
aaaaaaggtttttttgaagaggctgacaacggcgtgctcttccttgatgagctacaaagt
gcaaacctagcctcgcaaacacagctgctggatttactttctgccatcagcaatgatgtc
tggattagtaaagtaggggacgatgcggcaaagaaaaaattcaatgtaaaagtggtactt
gccgtcaatgagcccgtctcacgtctgctggccgaaggccggttaaggcctgatctgttt
catcgcattcgtgacgtggtgaaatttaaatcactcaacgagctgtttgcacaagaaaac
ggccaagcgtttttaacacaaattctgacgttctaccgttggaaatcacttgaacttcca
gcatttagtactgatggtaaagcgaaacaggtgctttcacagatttttatcatttatgaa
gacggtgtccttgaaaaaataatgagggctccttggccgggaaatttccgccagttggag
cgttttgcctgggatctattctttgtactcggcgaaagtgtcgtagtgaccaacgacctt
attgagcgtctactgagagaggaaaattcccgcattccaagcgcatttattgaggccgtg
ccaattcaaagcgagcaaactgttagcaaaatattcagtgaagtggaaaccatcatcaaa
aaacatcatttcaatatggcagctgcgcggcaagaactaggaatttataacctgaaatct
ccccccgcgttgagagggtttattctgagaaacaaagagcaatttagcgagggttttctt
gccgactcagcaattactaagatctttaccgaagcagctttagaacgtaagactggggct
gagtga
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