KEGG   Shewanella sp. W3-18-1: Sputw3181_0505
Entry
Sputw3181_0505    CDS       T00453                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
shw  Shewanella sp. W3-18-1
Pathway
shw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sputw3181_0505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shw03021]
    Sputw3181_0505
   03019 Messenger RNA biogenesis [BR:shw03019]
    Sputw3181_0505
Transcription machinery [BR:shw03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Sputw3181_0505
Messenger RNA biogenesis [BR:shw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Sputw3181_0505
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB NACHT AAA AAA_22 AAA_25 Spore_III_AA S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: ABM23356
LinkDB
Position
complement(543226..544491)
AA seq 421 aa
MNLTELKDTPISDLVSLAENMKLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVN
FDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP
KAGKTLLLQGIAQSISYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTQEELQKMWILRKILNPMDEVSAMEFLIDKLAMTKTNEEFFTAMKRTK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaacttaactgaattaaaagacacgccgatttctgacctagtctcgctagccgaaaat
atgaaactcgaaaatatggcccgcgctcgcaagcaggacattattttctcaatccttaaa
gcccacgccaaaagtggagaagacattttcggcggtggggtattagaaatactccaagac
ggtttcggcttcttacgcagctcagacggatcttatttggctggtccagacgatatttac
gtctcaccgagtcaaattcgccgcttcaatatgcgaacgggtgacaccatttttggtaag
attcgtccaccaaaagaaggtgaacgatatttcgctctactgaaagtcaatgaagttaac
ttcgataaaccagaaaactctcgcaataaaatcctatttgaaaacttaaccccactccac
gccgaagaacgtatgcgtatggagcgtggaaatggctcaactgaagatatcactgcgcgt
attctggatttatgctcaccgattggtaaaggtcaacgtggtttgatcgttgcaccacca
aaagccggtaaaacgctattacttcaaggtattgctcaaagcatcagctacaacaaccca
gaagtggtgttgatggtattgctgatcgacgaacgcccagaagaagtaacagagatgcag
cgcctcgttaagggcgaagttatcgcatcaaccttcgatgagccagccagccgccacgtt
caagtggctgaaatggtgattgaaaaagcaaaacgcttggttgagcacaagaaagacgtc
gttattttactcgactcaatcacccgtttagcccgtgcttataacactgttatcccgtca
tcgggcaaagtgttaactggtggtgtggatgctaacgccctacaccgtccaaaacgcttc
tttggtgcggcacgtaacatcgaacacggcggcagcttgaccattatcgccacagccttg
gtagatacgggttctaagatggacgaagtgatctacgaagaatttaaaggtacaggtaac
caagagctacatttgtcacgtaaagcggcagaaaagcgcgtgttcccagccattgacttc
aaccgcagcggtacgcgtcgtgaagaaaaactcacgactcaagaagagctgcaaaaaatg
tggatcctgcgtaaaatcctcaatcctatggatgaggttagcgcaatggaattcttaatc
gataaattggcgatgaccaagactaacgaagagttctttaccgccatgaaacgcactaag
tcttaa

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