Shewanella sp. W3-18-1: Sputw3181_0568
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Entry
Sputw3181_0568 CDS
T00453
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
shw
Shewanella sp. W3-18-1
Pathway
shw03420
Nucleotide excision repair
shw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sputw3181_0568
03430 Mismatch repair
Sputw3181_0568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shw03400
]
Sputw3181_0568
Enzymes [BR:
shw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sputw3181_0568
DNA repair and recombination proteins [BR:
shw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sputw3181_0568
MMR (mismatch excision repair)
Other MMR factors
Sputw3181_0568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
ABM23419
UniProt:
A0A6N3J146
LinkDB
All DBs
Position
623046..625214
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVAGTNMGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQV
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAIGFPIEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQERFKHILVDEFQDTNAIQYAWIRVLAGQT
ANVMIVGDDDQSIYGWRGAQVENLHRFLQDFPTATTIRLEQNYRSKGNILKASNALIANN
PERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERVVNTPPRGIGD
RTLDILRTTARQQELTLWQACLRLLDEKVLAGRAASAVRGFMDLIVTLQEDTQDMALYRM
ADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMPEELEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPSKMALEEGDRLDEERRLCY
VGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKAQVSTPMANNRFS
TQKSAAANDTGFNVGQRVNHPKFGEGKVTNFEGSGAQARVQVSFTDFGSKWLVVAYARLE
AL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactagacggcctgaatgataagcagcgcgaggctgtcgcggca
ccgcaatctagcatgttagtgttggcgggcgcgggcagtggtaaaactcgggtgttgacc
caccgtattgcgtggctgatgcaggttgaacagcagagtccgtactcgattctggcggtg
acgtttaccaataaagctgcggctgagatgcgcgaacgagttgaaaaagtcgctggtacc
aatatgggccgcatgtggattggcactttccatggcttggcacatcgcttgttgcgcact
cacttccaagatgcgggtttaccgcaaagcttccaaatcctcgattctgacgatcaagtg
cgcttgatcaaacgtattcttaaaagcctgaatttggatgagaaacaatatcctccacgc
caagctcagggttatatcaatggtaaaaaagaccaaggattacgccctaaacatatcgat
gccatcggttttcccattgagcaaaatctgttaaaaatctatcaggtttatcaagagtct
tgcgaccgcgcaggtttagtcgattttgccgaaatccttttacgtgcccatgagttatgg
cttaataagccgcatttgttggcccattatcaagaacgctttaagcatattttggtggac
gagttccaagataccaacgcgatccaatatgcgtggatccgcgtgcttgccggtcaaact
gccaatgtgatgatagtcggtgatgacgaccaatcgatttacggctggcgcggcgctcag
gttgaaaacctgcatcgcttccttcaggattttcctaccgcaaccaccattcgcctcgag
caaaactatcgctctaaggggaatattcttaaagcgtccaacgcgttaatcgccaataac
cccgagcgtatgggcaaagagttatggacggatgaagccgatggcgatccaatttcgctc
tattgcgcctttaatgaaatggatgaggcgcgctttattgtcggtcggataaatgattgg
catgaaaagggcggtaacctcagtgattgcgcaattttatatcgctcgaatgctcagtcg
cgggtattggaagaagccttattacacaaaggcttagcctatcgtatttacggtggctta
cgctttttcgagcgtcaagaaattaaagatgccatgggctatatgcgcctcatcagtaat
aaaaatgatgatgccgccttcgagcgggtggtgaatacgccgccccgtggtataggcgat
cgcaccttagatattttacgcactacggcgcgccaacaagagcttacgttatggcaagcg
tgtttaaggctgctggatgaaaaagtacttgccggccgtgcagccagtgcggtgcgtggc
tttatggatttaatcgttactctacaggaagatacgcaggatatggccttgtatcgcatg
gccgacactgtgatccaagcgtcgggccttaaggccatgtatgaagccgaaaagggcgag
aaagcccacgctagaatcgaaaacttagaagaactcgtcacggcggcacgtacctttgaa
atgcctgaagagcttgaggatatgggcgagcttaacgcctttttatcccatgctgcgctt
gaggcgggtgaagggcaggccgatgcctttaccgatgcggtgcaactgatgacgctgcat
tcggccaaagggcttgagtttaccatggtgtttatggcgggagtcgaggaagggattttc
ccgagtaaaatggcgctcgaagagggcgacagactcgatgaagaacgccgtctctgctac
gtgggcatgacccgcgcgatggaaaaactctacattacctatgcggaatcgcgccgtatc
tatggccgggaagattacgcgcggccgtcgcgttttatcaaagagatcccgccgcaatat
gtggatgaaattcgccttaaggcgcaggtttccactcccatggcaaataatcgttttagc
actcaaaagtcggcagcggcaaatgatacgggctttaatgttggacagagagtcaatcat
cctaaatttggtgaaggcaaggtcaccaactttgaaggcagcggcgcacaggccagagtt
caggttagttttaccgactttggcagtaaatggttagtggtggcttacgctcgtttagaa
gcgctttaa
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