KEGG   Shewanella sp. W3-18-1: Sputw3181_1084
Entry
Sputw3181_1084    CDS       T00453                                 
Name
(GenBank) Exonuclease, RNase T and DNA polymerase III
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
shw  Shewanella sp. W3-18-1
Pathway
shw03030  DNA replication
shw03430  Mismatch repair
shw03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:shw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Sputw3181_1084
   03430 Mismatch repair
    Sputw3181_1084
   03440 Homologous recombination
    Sputw3181_1084
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shw03032]
    Sputw3181_1084
   03400 DNA repair and recombination proteins [BR:shw03400]
    Sputw3181_1084
Enzymes [BR:shw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Sputw3181_1084
DNA replication proteins [BR:shw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Sputw3181_1084
DNA repair and recombination proteins [BR:shw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Sputw3181_1084
SSDB
Motif
Pfam: RNase_T Adeno_E4_34
Other DBs
NCBI-ProteinID: ABM23934
LinkDB
Position
1232005..1232910
AA seq 301 aa
MTRAPAPFPLERLADIPERPEDFRLLERIPLTREPQTWPLELSPVVGDERPMVLLDTETT
GLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTGITDDMVQG
QHIDDSLVASWLSDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSASGIDWKALGFESRK
LEYLLLRLGWFYEGHRAATDCFAMAWLFHLLPESVANLLSEADRRTVLVRAFGAPFDVKD
YLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRGSEHAHYDYKDARNRFKA
L
NT seq 906 nt   +upstreamnt  +downstreamnt
atgacaagagcccctgcgccatttccgctagagcgcctcgcggatatcccagaaagacca
gaagattttagattgctggagcgtattccattaacgcgtgagccgcagacttggccactt
gaactttctcctgtggtcggtgatgaacggccaatggtgctgctcgatacagagacaacc
ggactgtctgccgatgacgagtccattattgagcttggtatggttaaggtgctttacagc
ccctctgctaagcggattgtgtcgattgttgatgtgatcagcctgtatgaagatcccggc
aagccaatccccgagctgattaccgagttaaccggtattaccgatgatatggttcaaggc
cagcacattgatgattcactggtagcgagttggttatccgatgatccgctggtggttgca
cacaatgcgcagtttgatcgtcctttctttgaaaagcggtttgctgcattaggacatcta
tcttgggcctgttcagccagtggcatagattggaaggcgctgggttttgaaagtcgaaag
cttgagtacctgctgcttcgcttaggttggttttatgaaggacaccgagctgcaactgat
tgtttcgcgatggcctggttgttccatttgttgcccgagtccgttgcaaacttgttgtct
gaagcagacaggcgaactgtgttagttcgtgcgtttggtgcgccgtttgacgtaaaggac
tatttgaaagagcgtggttaccgctggcatgacggtgttaaaggtgccaacaaacattgg
tggcgcgaaatcagcgaagacgagttgccgcaggaacaaacttacctggatgatttgtat
catcgtggctcagaacatgcccactatgactacaaagatgcccgtaatcgatttaaagct
ttgtag

DBGET integrated database retrieval system