Shewanella sp. W3-18-1: Sputw3181_1658
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Entry
Sputw3181_1658 CDS
T00453
Name
(GenBank) type III restriction enzyme, res subunit
KO
K19789
DNA repair protein RadD
Organism
shw
Shewanella sp. W3-18-1
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shw03400
]
Sputw3181_1658
DNA repair and recombination proteins [BR:
shw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
Sputw3181_1658
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
DUF7577
Helicase_C_2
AAA_22
AAA_16
T1R_D3-like
SLFN-g3_helicase
Zn_ribbon_3
DZR
zf-tcix
AAA
ERCC3_RAD25_C
Cas3-like_C_2
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ABM24495
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Position
complement(1905935..1907743)
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AA seq
602 aa
AA seq
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MTVLNLSPHFGRYRSFISVPVNLRDYQQQAVDAAIQHFKQSTASAVLVLPTGAGKSIVIA
ELARIAKGRVLVLTHVKELVAQNAEKVGLLTTEASIYAAGLNQKATDGKTVVASIQSAAR
GLSQFDQPFSLVIIDECHRVSLEKTSQYQQVLKHLRTKNPQLRLLGLTATPYRLGTGWIY
QQHYHGKVGSPEHAVFEHCVFELPIRPLIKQGYLTAPTLFDGLSAQYDFSQLKANENGEY
AEAEVNDLLGHYGRATTAIVKQLIELSQHRKGIIIFAATVRHANEIFNLLNQTHAAQSAM
ITAQTHDDERDATIERFKAQELKFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIG
RGLRIAEGKKDCLIIDYAANGYDLYFPEVGQAKPNSKSVPVQVHCPVCDFANIFWGLTDD
DGDIIEHFGRRCQGIVEPQGKKQQCDFRFRSKSCPDCGEENDIAARICQHCQSTLIDPDK
RLRQVLSQQHHHLFRCQHMTLIDDDGNLKVQYLDIDGNEFNRRFKLQTPAQWRALYALFI
FPHSRTPGLKPKKYTKVTELINDADKFRMPDLLLLKKHKKGWDLLESYFDYQGRYQTENK
RG
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgactgtgctaaacttgtcgcctcattttggtcgatatagatcttttatcagcgtgcca
gttaacctccgagactatcaacagcaagcagtcgatgctgccatacaacattttaagcaa
agcaccgcttcagccgtactcgtcttgcctactggtgccggcaaaagtatcgtcatcgct
gaactggcacgtattgctaaaggtcgagtgctagtacttactcatgtgaaagaattggtt
gcacaaaatgcagagaaagtcggtttactgacaaccgaagccagtatttatgcggcggga
ctcaatcaaaaagccaccgacggaaaaaccgtcgttgccagtattcaatcagcagcgcgg
ggattatcgcagttcgatcagccattctcgttagtcattattgatgaatgccacagagtc
agcctagaaaaaaccagccaatatcagcaagtactcaagcatttacgcacgaaaaatccc
caattaagattgctcggtctcaccgccacaccctatcgccttggcactggctggatttat
cagcaacactatcacggcaaagtggggtctcccgaacatgccgtgtttgaacattgtgtg
ttcgagctgcccatcaggccactcattaaacaaggttacctcacagcgcctacgctattc
gacggcctcagtgcccagtacgatttcagccaacttaaagccaatgagaatggcgaatat
gccgaagccgaggttaatgatttgctggggcattacggccgcgcgaccacagcgattgtg
aaacaactcattgaactgagccaacatagaaaaggcattatcatttttgcggcaacggtg
cgccacgccaatgagatttttaatttactcaaccagactcacgcagcacagagcgccatg
atcacagcacaaacgcacgacgatgaacgtgacgcgacgattgaacgctttaaagcccaa
gagcttaagtttttagtcaacgtagcagtgctaacgacaggcttcgacgcgccccatgtg
gatttaattgcgattttgcgcccaaccgcctcagtcagtctttttcaacaaatgatcggc
cgtggattgcgaatcgctgaaggcaaaaaagattgtcttatcatcgactatgctgccaat
ggttatgacttgtatttccccgaggtcggccaagcgaaacccaacagtaaatcggtaccc
gtgcaagtgcattgccctgtgtgcgattttgccaatatattctggggactcacggacgac
gatggcgacattatcgaacactttggtcgccgctgtcagggtatcgtcgaaccgcaaggt
aaaaagcagcagtgcgactttcgctttagatctaaatcttgccccgattgcggagaagag
aatgatatcgcggcgcgcatttgccagcactgccaatcgaccctcatcgatcccgataaa
cgcctgcgccaagtgctcagccagcagcaccatcatttattccgctgccaacatatgacg
ctcatcgacgatgacggcaatctgaaagtgcagtacctcgatatcgacggtaatgaattc
aatcgccgctttaaattgcaaacgccggcccagtggcgagccctatatgccttattcatc
tttccccatagccgtacaccaggattaaaaccaaaaaagtacactaaggtgacagagtta
atcaacgacgcggataaattccgcatgcccgatctcttgctgctgaagaaacataaaaaa
ggctgggatctgctcgaaagctattttgattatcaaggtcgctatcaaactgaaaataaa
cgcggctga
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