Shewanella sp. W3-18-1: Sputw3181_1706
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Entry
Sputw3181_1706 CDS
T00453
Name
(GenBank) DNA polymerase III, subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
shw
Shewanella sp. W3-18-1
Pathway
shw03030
DNA replication
shw03430
Mismatch repair
shw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sputw3181_1706
03430 Mismatch repair
Sputw3181_1706
03440 Homologous recombination
Sputw3181_1706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shw03032
]
Sputw3181_1706
03400 DNA repair and recombination proteins [BR:
shw03400
]
Sputw3181_1706
Enzymes [BR:
shw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sputw3181_1706
DNA replication proteins [BR:
shw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sputw3181_1706
DNA repair and recombination proteins [BR:
shw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sputw3181_1706
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNA_pol3_tau_5
DNAX_ATPase_lid
AAA
AAA_22
RuvB_N
AAA_16
AAA_5
PIF1
AAA_14
AAA_30
ResIII
TsaE
AAA_2
AAA_18
Adeno_E1B_55K_N
AAA_assoc_2
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ABM24543
LinkDB
All DBs
Position
1961654..1964608
Genome browser
AA seq
984 aa
AA seq
DB search
MSHHDMLSFKVPGAHAPIFVSHTLGSSMSYQVLARKWRPATFEQMVGQSHVLHALTNALS
QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCGSCVEIAQGRFVDLIEV
DAASRTKVDDTRELLDNVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL
LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEVEALTLLAKAANGS
MRDALSLTDQAIAFGGGTVMLTQVQTMLGSIDEQHVIALLKALTDADITVLMQTSAQVLA
YGADAQEVLRSLLELLHQITLTQFAPACAQQSLYSAQIRAFAEQLTPEQVQLYYQILLTG
RKDLPHAPDPKSGLEMALLRAVAFVPEKPVKRWQVESPAEVSLPVGQTSTSLAALATSAA
EKKTDLVEQPTDVNVHAAVEINAPSDTADSALFAEQTLIISQALSQGYKLSESIAPTSIE
IPVAAISQSEDTKVETLVSTNEQAVVNNTDSDTQLDYVYGHGDYTQDVAPLDIYQDDYAS
FSSESYSSLTQEMVAEQATINPVSPATQTSTQVENTTGVTIPTATGIAVDPSLGQSSFKQ
TATASLEDDDILSAVLAARESLLLDLDALSAKDGDEKKPSLDFKRKEPTIGPLSATRSDI
TTSPKAVKAVSQSVESIDSEFDFDDDFEPAPQMDGGFAQSVTQANKNPEASQPLTQNGQI
TQNGQKPSGEKPVSVDDPNDRPPWEAAPATNMQHPVVHPVSALEPVVPTAMQDELAPIDQ
APHTPVSLMSDPIEDAVKESLTEPVTGLSNQTGLSVVQSVSGNPLDLHWYKLMASLDIGG
RVRQLAVNSVCQAQSDPLPLLLKPDQKHLAADVAIVQLEQALTAALGNPRRVQVVIGSDP
KRETPLELRKRFHQELLQQAQQSLIKDDNVQWLIQRLGAELDTDTLVYPPDLLNQRSQQI
QALPEPELTNEFTQSEGKLALSKA
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaccatgacatgttatctttcaaagttcccggggcgcatgctcccatttttgta
tcacacactctggggagttccatgtcatatcaggtgttagccagaaaatggcgccctgcc
acatttgaacaaatggttggtcaaagccatgtattgcatgctttaaccaatgcactaagt
cagcagcgtttacaccatgcttacctgtttacagggacgcgaggcgtaggtaaaaccagc
ttagcgcgactctttgccaaaggcttaaactgcgaacaaggcgttactgcaactccctgc
ggcgtctgcggtagttgtgtcgagatcgcccaaggccgatttgtcgatttaattgaagtt
gatgcagcgtcccgcactaaggtcgatgatacgcgcgagctgctggacaatgtgcagtat
cgcccgacccgtggccgttttaaggtttatcttatcgacgaagtgcatatgctgtcgcgc
agcagttttaacgcactgcttaagaccttagaagaaccccctgagcacgttaaatttctc
ctcgcgacaacagacccacagaaactacccgtgactgtgttatcccgttgcttgcagttt
aatttaaaaagtctgacacaggatgaaattggcactcagcttaatcatatcttgacgcag
gagcagctcccctttgaggttgaagcgctaacactccttgccaaagccgccaatggtagt
atgcgtgatgcgttgagcttaacggatcaggccattgcttttggtggtggtactgtgatg
ctcacacaagtgcagaccatgcttggtagtattgatgagcaacacgttatcgccttactg
aaagccttaacggatgccgatatcacagtactaatgcaaaccagtgcccaagtgctcgcg
tacggcgccgatgcccaagaagtgttgcgcagtttgcttgagctgttacatcaaattact
ctaacgcagtttgcccccgcttgtgctcagcagtccttatacagcgcacaaattcgtgct
tttgctgagcaattaacgccggagcaagtacagctttattatcagatcctattaacgggt
cgcaaggatttaccccatgccccagatcctaaatcaggcctagaaatggcactcttacgg
gccgttgcctttgtgccagaaaagcccgttaaacgctggcaagtcgaatcgccagccgag
gtgagtttacctgtagggcaaacatcaacttcattggcggcgttagcgacatcggcagct
gaaaaaaaaacagatttagttgaacaacctacagatgttaacgtacatgctgcagttgag
attaatgcaccttcggatacagcagatagcgctttgttcgcagagcaaacgctgatcatt
agccaagccctaagtcagggatataagttatctgaatccattgcaccaacaagcatcgag
atacctgtcgctgcgatatcgcaaagtgaagataccaaagtcgaaacactggtctcaacc
aatgagcaggcagttgtaaataacactgacagtgatacccaattagattatgtctatggg
catggggattacacccaagatgtcgcgccattggatatttatcaagatgattatgctagc
ttttcttctgagtcatacagttcgttgactcaggaaatggtggctgaacaagcgactatt
aaccctgttagccctgcaactcaaacctcaactcaagttgaaaataccactggagtcact
attccaaccgccacaggcatcgcggtggatccctctttagggcaatccagtttcaagcaa
actgccacagcctcgttggaggatgacgatattttatcggcggtattagctgcaagagag
tcgctgttgttggatctcgatgccttgagcgcgaaggatggtgatgaaaaaaagccttca
ctggattttaaacgtaaagagccaacaattggcccgttatctgccaccagatcagatata
accacttctcctaaagcggtaaaggcggtatctcagtctgtagaatccattgactcagaa
tttgattttgacgatgattttgagcctgcgccacagatggatggagggttcgctcaaagc
gttacacaagcaaacaaaaatccagaagcatcgcaacctttaacacaaaatgggcaaata
acacaaaatgggcaaaaaccttcgggggaaaaacccgtcagcgtcgatgatcccaatgat
cgtccgccttgggaggctgcccctgctacaaatatgcagcatcctgtggtacaccctgtt
tcagcgttggagccagtagttcctactgcaatgcaagatgaattggcaccaattgatcag
gctccccatacgcccgtttcacttatgagcgaccctatagaggatgcggtcaaggaatca
ttaactgaaccagtaacgggtttgtcgaatcaaaccggactgagtgtggtgcaatctgta
agtggtaatccattggatttacattggtataagttaatggcgagtttagatattggcggt
cgagtacgccaacttgcggttaattcagtatgccaagcgcaaagcgatccactaccatta
ctgttaaaacccgatcaaaaacacttagcagccgatgtcgcaatcgtgcaattagaacaa
gcattgacggcggcgctcgggaacccaaggcgagtacaagtagtcataggaagcgatcca
aagcgggaaacaccccttgagttacgtaagcgttttcatcaagaactattacaacaggca
cagcagtcgttaattaaagacgataatgttcaatggcttattcagcgtttgggtgcagag
cttgataccgatactttagtgtatcctcccgatctgttaaaccaacggagccagcagatc
caagcgttacctgaaccagagttgacgaatgagttcactcagagcgagggtaaactagcg
ctaagtaaggcttaa
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