Shewanella sp. W3-18-1: Sputw3181_1901
Help
Entry
Sputw3181_1901 CDS
T00453
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
shw
Shewanella sp. W3-18-1
Pathway
shw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Sputw3181_1901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shw03400
]
Sputw3181_1901
Enzymes [BR:
shw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Sputw3181_1901
DNA repair and recombination proteins [BR:
shw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sputw3181_1901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABM24736
UniProt:
A0A6N3J4J1
LinkDB
All DBs
Position
complement(2184749..2188519)
Genome browser
AA seq
1256 aa
AA seq
DB search
MGEDRMLSTHTTTQTPTVQHQAEALNPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLG
DGIDTPLTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLPIEDPFVQALYDNTPVD
ERSIALRRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSEFLHHAVR
DFWREACYPLPDYLAQVIAKEFGEPDGLIKQLRPLLGASQAQPLSPTANFTTLAQSLSQS
LERFKLAWPRGRDGLLELLHNLPLNGTRFGKPSDHYPKLAAMFDALDNWLAYGNGLPPIK
VLEDLSLSELKLNKGGVLPSVSEAPLLDHMEQLAALIKAVKPAFLYSAKQGISARFAKQK
QQQNVLTPDDLLTTLAEALNANRQTLPKAVASRFPVALIDEFQDTDPLQFAIFSSIYQPH
HAFNLPTDNHLNHAENNLSLLMIGDPKQAIYAFRGADIYTYIEARKATEAHYHLDTNYRS
STNMVAGVNHLFNRHPDPFISQSIPFDSVKTPSSAKHKILTEPSENPAALRVRLLSETEN
GLNKTTARHRLANDAAAEITRLLTSAAHGECYTPKGPLMAKDIAILVRDRNEAAVMKAAL
SQRQIGAVFLSRDSVFDTLEAREMSLILRSLANPKDERALRSALATALLGYNAEQIHAFN
QNEEQRQQLLEQFFDLHTIWQKRGIMPALLSLANSTSLIERLLHAPQPKLDNNQEQETTY
GERRLTDFRHLAELLQQKATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVT
IHKSKGLEYPVCFVPFVSLARDNRRRPTPMLYHKINQTHGQALVWDIEGTEEGWEQFRQE
TLAEDLRLLYVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGITDADCDFNRI
SQAAQNLAQRIDAISIDKIPEETSLQTLPSSHDATQTLAPKTIHRQYSTPWRVGSYSGLV
KNTSHGKAAPGADDEALSVLEQGVASRDQLETDNSLDPKPFGLNRFNFERGANAGSFMHL
VLELIDFTKAEFDLPEQLPKAMLQYGIAAEWVDVLHAWYLDILKAPLALMPAEAEATTPL
INPKLCLATLSKQDTLVEMEFYLPLNALKDTQLNALLNQFGYRSTLKFDDLQGMLKGFID
LTFEYEGKFYIADYKSNHLGDDIYAYHQAALQGAIKEHHYDLQYILYSLALHRYLRLRLP
AYDYDTHIGGCYYLFLRGMSAQYPGYGIYYDKPPKALIYALDALFDNPFIDTGVTV
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagataggatgttgagtacacacacgacaacccaaacgccaacagtacaacat
caggctgaggcacttaacccactgacattgccctttggcggcagtcggctgatagaagcc
agcgcaggaacgggtaaaacctatactatttcaggtctttatctgcgtttactcctaggt
gatggcatcgatacccctttaacctgtgaacaaattttagtggtcacctttaccaatgcc
gcaactgaagaattaagggatcgtattcgtcgccgcattcaagtcgcctttaagtgtttt
ttaggcttgccgattgaggatccctttgtacaagcactttacgacaacacgcctgttgat
gaacgctcaattgcccttaggcgtttcgatttagcactaaaatccctcgacgaagccgcg
atttttactattcacggtttttgccagcgcattttgtcggatcttgcctttgaatcatcc
ctgcttttcgagtcagactttaccttagatgatagcgaattcctgcaccatgctgtgcgg
gatttttggcgtgaggcttgttatcccttaccagactacttagcccaagttatcgcaaaa
gagtttggcgagcccgacggtttaatcaaacaactgcggccattactgggggcgagccaa
gcgcaaccgcttagcccaacagcaaactttaccaccttagcgcaatccctcagccagagt
ttagaacgcttcaagttagcttggccccgtggccgtgatggattactcgagttattgcat
aacttgccacttaatggcacgcgatttggcaagccaagtgatcattatcccaagcttgcc
gcgatgttcgatgccttagataattggcttgcctatggaaatggtctaccgcccataaaa
gtattggaggatttatccctatcggaacttaagctcaataaaggcggcgtgctcccaagt
gtaagcgaagctcccttactggatcatatggagcaattggcggcactcattaaagccgtt
aaacccgcgtttttgtatagtgctaaacaggggattagcgcgcgttttgcaaaacaaaaa
caacaacaaaatgtattgacgcccgatgacctactcaccaccttagccgaagcattaaat
gccaaccgtcagaccttacccaaagcggtagcaagtcgtttccctgtggcattgattgat
gagtttcaggacacagatcccctgcaatttgctattttttcaagcatttatcaaccccat
cacgcattcaatttaccaactgataatcaccttaatcatgctgaaaacaacctcagtcta
ttgatgattggcgatcctaaacaggcgatttatgcttttcgtggcgccgatatctatacc
tatatcgaggctcgcaaagccactgaagcccactatcacttagatacaaactaccgctca
agcaccaatatggtcgctggcgttaaccatttatttaatcgacatcccgatccttttatc
agtcaatcgattccctttgacagcgtcaaaacacccagtagcgcgaagcataaaatatta
accgagccaagtgaaaatcccgctgcgctcagagtaagactattaagtgaaaccgaaaat
ggcctaaataaaaccacggcaaggcatcgactcgctaacgatgccgcggcagaaattacc
cgtttgttaacgagtgccgcccatggtgaatgctatactcctaaagggccattaatggct
aaagacattgccatattggtgcgtgatcgtaacgaagccgcggtaatgaaagcagcactc
agtcagcgccaaatcggtgctgtgtttttaagtcgcgacagtgtattcgatacccttgaa
gcgcgagaaatgtcgttgatcctacgctcactggcaaaccccaaagatgagcgcgcactg
cgaagcgccctcgccacggcattacttggttacaacgctgaacaaattcatgcatttaac
caaaatgaagagcagagacaacaactgttagaacagttttttgatttacacactatctgg
caaaaacgcggcatcatgccagcactgctcagtcttgccaatagtacgtcacttatcgaa
cgtttgctgcacgctcctcagcccaagttggataacaatcaagagcaagaaacaacatac
ggtgaacggcgcttgaccgactttcgtcatttagctgaactattacagcaaaaggccacg
gaactcgacgggataagtgccctactcaattggtatgaacaacaacttattgataataca
ggaacagatgaacaacagcttcgcctagaaagcgagcagaatttagtgcaaatcgtcact
atccataaaagtaagggactcgaataccccgtttgtttcgtgccctttgtcagtctggcg
cgggacaatcgccgtcgcccaacacctatgctttaccacaaaataaaccagactcatggg
caagcgttagtgtgggatattgaaggaacagaggaaggctgggagcagtttaggcaagaa
accttggccgaagatctccggctattgtatgtggcactcactcggcctgtgtatctgtgt
tacttgtatatcgctaaccacagccgtcaactcaaaaatggccttaaaagtcagctccat
gaaaccgctattggctatcttctggggatcaccgatgccgattgtgattttaaccgtatc
agccaagcagcacaaaatcttgcccaacgtattgatgcgattagcattgataaaatacca
gaagaaactagcctgcaaacattgccatcaagccatgatgcaacccaaacactcgccccc
aaaacaatccatcgccagtacagtacaccttggcgagtcggcagttattctggtttagtg
aaaaataccagccacggtaaagccgcgcccggtgccgatgatgaagcgctcagcgtctta
gaacaaggtgttgcatcacgcgaccaacttgaaaccgataacagcttagatcctaagcca
tttgggcttaatcgctttaactttgagcgcggcgcaaacgcagggagttttatgcactta
gtgctcgagctaattgattttacaaaggcagagttcgatttacctgagcaacttcctaaa
gccatgctgcaatatggtatcgcagccgaatgggtagacgtcttgcatgcttggtatctt
gatatcctcaaggcaccccttgcactgatgcccgctgaagccgaagcgacgactccactt
atcaatccaaagctgtgtttggccacattatcaaaacaagataccttagttgaaatggag
ttttatttaccccttaacgcgctaaaagatacacagcttaatgcgttattgaatcagttt
ggttataggtcaacccttaaatttgatgatcttcaaggtatgctgaaaggttttattgac
ttaacctttgaatatgaaggtaaattttacattgctgactataaatccaaccatctcggt
gatgatatatatgcctaccatcaggcggctcttcagggagcaattaaagaacatcactat
gatttacagtacattctttattccctcgccctgcacagatacttacgattgcgcctgccc
gcatatgattatgacacccatatagggggttgttattatttgtttttaaggggaatgtct
gctcaatatcctggctatggtatttattatgataaaccgcctaaggcactgatctatgcg
ctggatgctttatttgataacccatttatcgacactggagttacggtatga
DBGET
integrated database retrieval system
