Shewanella sp. W3-18-1: Sputw3181_1972
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Entry
Sputw3181_1972 CDS
T00453
Name
(GenBank) integration host factor, beta subunit
KO
K05788
integration host factor subunit beta
Organism
shw
Shewanella sp. W3-18-1
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shw03032
]
Sputw3181_1972
03036 Chromosome and associated proteins [BR:
shw03036
]
Sputw3181_1972
03400 DNA repair and recombination proteins [BR:
shw03400
]
Sputw3181_1972
DNA replication proteins [BR:
shw03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Sputw3181_1972
Chromosome and associated proteins [BR:
shw03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
Sputw3181_1972
DNA repair and recombination proteins [BR:
shw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
Sputw3181_1972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-CCDC81_euk_2
ThiS
Glycos_trans_3N
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
ABM24806
UniProt:
A1RJG1
LinkDB
All DBs
Position
2287329..2287616
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AA seq
95 aa
AA seq
DB search
MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLESGDRIEIRGFGSFSLHYRAPRT
GRNPKTGSSVELEGKYVPHFKPGKELRERVDAVNV
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatccgaactgatcgaaaaactcgccaccaggcagtcgcagctgtcggcgaag
gaagttgaaagtgcaatcaaagaaatgttggagcaaatggcgacaacattagaaagcgga
gatcgtatcgagatccgtggctttggtagtttctcgcttcattatcgtgcgccgcgtact
ggccgcaatccaaaaactggttcatcagttgaattggaaggcaaatacgtcccgcacttt
aagccaggcaaagaactgcgcgagcgtgttgacgccgttaatgtgtga
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