Shewanella sp. W3-18-1: Sputw3181_2108
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Entry
Sputw3181_2108 CDS
T00453
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
shw
Shewanella sp. W3-18-1
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shw03019
]
Sputw3181_2108
Enzymes [BR:
shw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sputw3181_2108
Messenger RNA biogenesis [BR:
shw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sputw3181_2108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
SLFN-g3_helicase
HA2_N
T2SSE
Kinesin
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ABM24936
UniProt:
A0A6N3J532
LinkDB
All DBs
Position
complement(2422865..2426746)
Genome browser
AA seq
1293 aa
AA seq
DB search
MVLNSDKHPLSNAFLNLCYQSDASRIRRRLFKLNKEADSDKKTHQLAQLTEQAQTAFEKV
VQRRNARPKITYPENLPVSLMRDEIARAIAGNQVVIIAGETGSGKTTQLPKICLELGLGC
RGMIGHTQPRRLAARSVASRVAEELQSPLGEVVGFKVRFADALKSESYIKLMTDGILLAE
LTSDRYLDQYDTIIIDEAHERSLNIDFILGYLKQILKKRPDLKVIITSATIDVERFSKHF
NNAPIIEVSGRTFPVETRYRPLVQDTDADLDQIEGIFAAVDELVAEGLGDILIFMNGERE
IRDTAEQLSRRNYRDTEILPLYARLSYGEQSKVFHSHRGRRIVLATNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNNRPA
FTDPEILRTNLASVILQMLAIGLGDIGAFPFIEPPDPRHIRDGFLLLEELQAVKHQHGKL
VLTPLGRQLAQIPVDPRLARMVVESHQLGCLNEVLVIAAGLSIQDPRERPMDKKQASDEA
HRRFADPHSDFVSWINLWQHLKDQQKELSASQFRKKCRDEYLAYLRVREWQDLYTQLKQA
VHDLKWRLNDTPATYDTLHRALLSGLLSHVGFKDNNNEYLGARNRKFFVFPGSPLAKKGP
KWIMAAELTETSRLFARCCAKIEPEWLEPLAAHLIKKSYVEPHFEAKPGSVIALENQVLY
GLTVVHRRKVQYGPIDPIEARDIFIRSALAEGQLQTQEAFFVANQKLLEDIESLEHKSRR
RDILVDEQVLMDFYEPRIPQGIYNAQLFFGWWKKAKREQPDLLDFNKALLMQRSADHISA
LDFPDTWHKGNLRLKLSYHFEPSAADDGVSVHIPVALLNQIDEMDFDWLVAGLREEKCIA
LIKSLPKSLRRNFVPAPDYARACVQAMVPFSASLLEAMCKQLLRMSGTRVNPEDFDLTQI
PLHLQMNFKIEDDKHKLIAEGRMLDTLKAELQGVVAKAIRQVADKGIEKEALTEWSFGEL
PKQYQQQKGNYQVRAFPALIDNKDSVAIKLFDDELEAQDAHRQGLRRLLLLNIPSPVKHL
QQALPNKAKLAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDVRDQLQFEQAKDWVRQEL
NPTAEQIALKVEQILTLYQGIKKRLKGKISLDIAFAMSDIQSQLDKLVFKGFVEACGWSR
LGDVARYLKAIEIRIDKLPVDPTRDRLHMQSINKVQEILAAQLAKVPRSVPTPQTLIEAR
WMIEEYRVSCFAQVLGTAYPISEKRILNHIQQG
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttggttttgaactctgataaacatccgctctcgaacgctttcctcaatctttgctatcag
agcgacgcgtcgcggatccgacgtcgcttatttaaactgaataaagaagcggattccgat
aagaagacgcaccaattagcacagcttactgagcaagctcagacagcctttgaaaaggtt
gtgcaacgccgtaacgcccgtccaaaaattacttacccagaaaatcttcctgtatcgtta
atgcgcgatgagattgcccgagccatagcgggtaatcaggtggtgattattgcgggtgag
acgggttcaggtaaaacgactcagttacctaaaatctgtctggaattaggcttaggttgc
cgtggcatgataggtcacacacagccgcgtcgtttagctgcgcgcagtgtcgctagccga
gttgccgaagagttacagagtccactgggtgaagtggtgggctttaaggtgcgttttgcc
gatgctttaaaaagtgagtcttatatcaaattaatgaccgacggtattttactggcggag
ttaacctcggatcgctatttagatcaatacgatactatcatcattgatgaagcccacgaa
cgtagcctcaatatcgattttatcttaggttatctcaagcaaattctgaaaaagcgtcca
gatttaaaagtcatcattacatcggcgaccattgacgttgagcggttctctaaacacttt
aacaatgcacctattattgaggtatcgggtcgaacgtttcctgtcgaaacccgttatcgc
ccgcttgttcaagatacggatgccgatctggatcagatcgaaggcatttttgcggcggtc
gatgaactcgtcgccgaaggacttggcgatatactgatttttatgaacggcgagcgggaa
atacgcgacaccgcggagcaattaagccgtcgtaattaccgtgatacagagattttgcca
ctttacgctcgcctatcctatggcgaacaatccaaagtgtttcatagccaccgaggcagg
cggattgtgctcgccaccaatgtggcggaaacttcattgactgtacccggcattcgttat
gtgattgatcctggtacggcgcgtatcagccgttatagctatcgtaccaaggtgcagcgc
ctgccgattgaacctatttcacaggcgagtgctaatcaacgtcaaggacgttgtggccga
gtggggccggggatttgtattcgtttatacgatgaggcagattttaataatcgtccggcg
tttaccgatcctgaaattttgcgcactaacttagcctcggtgattttgcagatgctcgcg
attggtcttggtgatattggggcgtttccctttattgagccaccggatccacgtcatatc
cgagatggttttttattgcttgaggaattacaagccgttaagcatcaacatggtaaatta
gtgttaacaccactcggacgacaacttgcacagatcccggtcgatccgcgcttagcaaga
atggtggttgaaagtcatcaactgggctgcttaaacgaagtgttagtgattgcggccggt
ttatcgattcaagatccccgcgagcggcctatggataagaagcaagcgagcgatgaagcc
catcgccgttttgccgatccacattctgattttgtcagttggataaacctatggcagcac
ttaaaagatcaacaaaaagaactctctgccagtcagttccgcaaaaaatgccgtgatgaa
tacttagcctacctgcgagtgcgtgaatggcaggatttatatactcagcttaagcaagcc
gtgcacgatttaaagtggcgtttaaacgatacgccagccacttacgataccttgcaccgt
gcgctcttgtcgggcttattgagccatgtgggttttaaagataataataacgagtactta
ggtgcgcgtaatcgcaagttttttgtattccctggttcaccactggccaaaaaaggccct
aaatggattatggcggctgagcttaccgaaacctcgcgcctatttgcccgttgctgcgcc
aaaattgagccagaatggcttgagcccttagccgcacatttgattaagaaaagctatgta
gagccgcattttgaagcaaaacccggcagcgttattgctcttgagaatcaagtactctat
ggtttgacggttgtgcaccgtcgcaaggtacagtacggccccatcgatcctattgaagcg
cgggatatttttatccgcagcgctttggcagaagggcaactccaaacccaagaagcattt
tttgtcgcaaatcaaaaactgctcgaagatatcgaatccttagagcataaatcccgccgt
cgcgatattttagtcgacgagcaagtcttgatggatttttatgagccgcgcattccacag
ggcatttacaatgctcagctattttttggctggtggaaaaaggctaaacgcgagcagcca
gatttactcgattttaacaaagccctgttgatgcaacgcagtgcggatcatatctcggca
ttggatttccctgatacttggcacaaaggcaatttacgcctcaaactcagttatcacttt
gagcccagtgccgcggatgatggggtgtctgtgcacattcccgtggcgttactcaatcaa
atcgatgagatggattttgactggttggtggcggggctcagagaagaaaaatgtattgcg
ttgattaaatccttacctaagagtttgcggcgtaattttgtgccggcacctgattatgcc
cgggcttgtgtgcaggctatggtgccctttagtgccagtttgcttgaggccatgtgcaag
cagttattgcgtatgagtggtacacgtgtgaatcccgaagattttgatttaacgcagatc
ccactgcatttacaaatgaattttaaaatcgaagacgataaacataagctcattgccgag
gggcgaatgctcgataccttaaaagcagagctgcaaggcgtagtcgctaaggccattcgt
caagttgcagataaaggcatagaaaaagaagcgctgacagagtggtcatttggtgagtta
cccaaacagtatcaacagcagaaaggtaactatcaggtacgggcatttccagcgctcatc
gataataaagacagtgttgcaatcaaattattcgatgatgaattagaggctcaagatgca
caccgtcagggcttacggcgtttactgctgcttaatattccatcgccagtgaaacatttg
cagcaagccttgcccaataaggccaaattagccatgtatttcaatccatttggccaagtg
caaatcttgattgacgatattattgccgctgcagtacagcagttgttggatgaaaaggcc
ctcgatgtgcgtgatcaactgcaatttgagcaggcaaaagactgggtccgccaagaactt
aatcctactgccgaacaaatcgccttgaaggttgagcagattttgaccctatatcagggc
attaaaaagcgccttaagggcaaaattagcctagatattgcttttgctatgagtgatatt
caaagccaattagacaagttagtctttaagggatttgtcgaagcttgtggttggagccgt
ctaggcgatgtggcgcggtatttaaaagccattgagatacgtatcgataaattacccgtc
gatccgacccgcgaccgtttgcatatgcaaagtatcaacaaagtacaagagatcttagcg
gcgcagttagctaaggtgccgcgatctgtgccaacgccacagacattaatcgaggcgaga
tggatgattgaggaatatcgagtgtcctgttttgcgcaggtgttaggtactgcctatccc
atctctgaaaaacggattttgaatcatattcaacagggttaa
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