Shewanella sp. W3-18-1: Sputw3181_2969
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Entry
Sputw3181_2969 CDS
T00453
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shw
Shewanella sp. W3-18-1
Pathway
shw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sputw3181_2969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shw03019
]
Sputw3181_2969
Enzymes [BR:
shw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sputw3181_2969
Messenger RNA biogenesis [BR:
shw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sputw3181_2969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
AAA_19
P-loop_SecA
AAA_22
Helicase_RecD
SecA_DEAD
AroM
Gag_p24
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABM25786
UniProt:
A0A6N3J7D1
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All DBs
Position
3392900..3394201
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AA seq
433 aa
AA seq
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MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL
QKMVEKPSETLKSNTRVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK
LKRGADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR
QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG
KKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLVA
TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE
KLIGQKIRRVTVPGYEVGSRELLLKQLQTRRSFAKKQQRTDNAGAQVIAEKSMQGRRVKV
KVGQAPSKAKKLK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaatcttttagtttttcccccgagattttgcgcgctatctcagattgcggt
tatcaacaaatgacgcctattcagcaacaagcgatacccgctattcgccgcggccaagat
gtgctcgccagcgcccaaacgggtacaggtaaaactgccgcctttgccctgcccattctg
caaaagatggttgaaaaaccaagcgaaactttaaagtcgaatacaagagtattaattctt
actccaacccgcgagcttgcggctcaagtggctgacaacgtcacggcttactgtaaatat
ttaaattttagcgtattaaccatttatggcggcgtaaagattgagactcaagcgcaaaag
ctcaaacgcggtgccgatgttatagtcgcgaccccaggtcgtttactcgaacacttaacc
gcctgtaatgtaagtttatcaaacgtcgattttttagtgctcgatgaagccgatcgaatg
ctcgatatgggttttagtgccgacatccaaaaaattctgcaagcggtaaataaaaagcgt
caaaacttactgttttcagcgaccttctccagcgcagtcaaaaaactcgccaacgatatg
atggtcaaaccgcaggtgatcagcgtcgacaagcaaaacacgacagcagataccgtaagc
caagtggtttaccctgtggaacaacgccgtaaacgtgaattactatcagaacttattggc
aagaaaaactggcaacaggtattggtatttaccgcgacccgtgaagccgctgatacttta
gttaaagagttaaatttagacggtatcccatcagaagtggtccacggagaaaaaggccaa
ggtagtcgccgccgcgccctacgcgaatttgtggcgggtgatgtgcgcgtactggttgcc
actgaagtagccgcccgcggcttagatatcccaagccttgaatacgtggttaactacgat
ttacctttcctcgccgaagattatgttcaccgtatcggtcgtactggccgtgcaggtaaa
acaggggtcgccatctcatttgttagccgcgaagaagaacgtaccttagccgatatcgaa
aaattgatcggtcaaaaaattcgccgcgtcacagttccaggctatgaagtgggtagccgc
gaattgctattaaaacaactgcaaacccgtcgcagttttgctaaaaaacaacaaagaacc
gacaatgctggcgcccaagttattgcagaaaaaagcatgcaaggtcgccgcgtaaaagtg
aaggttggccaagcaccaagtaaagccaaaaaacttaaataa
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