Shewanella sp. W3-18-1: Sputw3181_3281
Help
Entry
Sputw3181_3281 CDS
T00453
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
shw
Shewanella sp. W3-18-1
Pathway
shw03410
Base excision repair
shw03430
Mismatch repair
shw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sputw3181_3281
03430 Mismatch repair
Sputw3181_3281
03440 Homologous recombination
Sputw3181_3281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shw03400
]
Sputw3181_3281
DNA repair and recombination proteins [BR:
shw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Sputw3181_3281
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Sputw3181_3281
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sputw3181_3281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ABM26095
UniProt:
A0A6N3J7W9
LinkDB
All DBs
Position
complement(3745221..3746975)
Genome browser
AA seq
584 aa
AA seq
DB search
MPRFNESLSPLIHKIVRRPTVDDSHLPVHLPPLLKQLYARRGVMPHECELALQGLLRPET
MKGLVEAAAIIADAMQANKSILIVGDFDADGATSTSVCMLALRMMGALKVDYLIPNRFDY
GYGLSPEIVAVAASKQAELLITVDNGISSIEGVAAAKAFGMQVIITDHHLPGHELPAADA
IVNPNQPGCPFASKSIAGVGVAFYLMTALRAELRTRNWYQSRGIAEPNLGTLLDIVALGT
VADVVSLDANNRILVEAGLQRVRAGRCRVGITALLEVAKRNPARILASDFGFAVGPRLNA
AGRLDEMALGVETLLCEDIMYARRMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEAE
LPWGIALFQEDWHQGVIGILASRIKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLE
LVNTRHPGLIIKFGGHAMAAGLSLKAGSFATFAKAYDDAVREQLKPELLTGELWSDGELT
PTELNLEIAQLLRNAGPWGQAFEEPLFDGYFKIVQQRLVGERHLKLVLETQCGTVMLDAI
AFNVDLHTWPDATINHARIVYKLDVNEYRGNFSLQLMVEQIEAM
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
ttgccacgatttaatgagagtttgagtcccttgatccataagatagtccgtcgcccaacc
gttgatgacagtcatttacccgtccatcttccacctctgttaaaacagctttatgctcgc
cgaggtgtcatgccccatgaatgcgagcttgcgcttcaagggcttttacgcccagaaacg
atgaaaggcttggttgaagctgcagccattattgctgatgcgatgcaggcgaataagtcg
attttaatcgtgggtgactttgatgccgacggtgcaacatcaacgagtgtgtgtatgtta
gcgctacggatgatgggcgctctgaaagtggattatttgatccccaatcgctttgattat
ggttatggactcagccctgaaattgtcgcggttgccgcctcgaaacaggctgaactatta
attacagttgataatggtatttcctcaatagaaggtgttgcagcggctaaagcctttggt
atgcaagtgattattaccgaccatcatttgcctggccatgaattaccggctgccgatgcg
atagtgaaccctaaccaaccgggctgtccatttgccagtaaatcgattgccggtgttggc
gttgccttttatttgatgacggcgctaagggcagaacttcggacgcgaaactggtatcaa
tcccgcggcatcgctgagcccaatttaggcacactgctcgatattgtcgccctaggcact
gttgccgatgtggtatcactcgatgccaataatcgaattttggtcgaggcgggactgcag
cgcgtgcgagccggacgttgccgtgtagggattaccgcgctgcttgaggtggctaagcga
aatccggcgcgcattctcgcatctgactttggttttgccgtggggccaaggcttaatgct
gcgggtcgtctcgatgaaatggcgcttggggtcgaaacgctactttgtgaagatataatg
tacgctcggcgtatggccgcagagcttgatgggttaaaccaagagcgccgcgagctggaa
gttggtatgcagcaggaagccttaaaaagcctagagcatttaaagctcaacgaagctgaa
ttaccttggggtatcgccttatttcaagaagattggcatcaaggcgttatcgggattttg
gcctcgcgcattaaagacaaatatcatagacccgtgattgcctttgccgatgcgggcaat
ggtgaaattaaaggttcggcgcgttcgataaaaggcttgcatatgcgcgacttgctcgag
ttagtgaacactcgccatccaggattgattatcaaatttggcggtcatgctatggcggcg
ggtttatcgctcaaagcgggcagttttgcgacatttgctaaagcctatgatgatgcggtg
cgtgaacagcttaaacctgagttattaacgggcgagctttggtccgatggggaactcact
cctacagagttgaatcttgaaattgctcagctattgcgcaatgcggggccttggggacaa
gctttcgaagagccgctctttgatggttattttaaaatagtgcagcagcgccttgttggt
gagcgccaccttaagcttgtgctcgaaacccaatgcggcactgtgatgctcgatgccatt
gcctttaatgtggatttgcacacttggcccgatgcgacaattaatcatgctcgaattgtc
tataaactcgatgtgaatgagtatcgcggcaatttttcgctgcaactgatggttgaacaa
atcgaagctatgtaa
DBGET
integrated database retrieval system