Shewanella sp. W3-18-1: Sputw3181_3469
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Entry
Sputw3181_3469 CDS
T00453
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
shw
Shewanella sp. W3-18-1
Pathway
shw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sputw3181_3469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shw03019
]
Sputw3181_3469
03110 Chaperones and folding catalysts [BR:
shw03110
]
Sputw3181_3469
03029 Mitochondrial biogenesis [BR:
shw03029
]
Sputw3181_3469
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shw04147
]
Sputw3181_3469
Enzymes [BR:
shw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Sputw3181_3469
Messenger RNA biogenesis [BR:
shw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Sputw3181_3469
Chaperones and folding catalysts [BR:
shw03110
]
Heat shock proteins
HSP60 / Chaperonin
Sputw3181_3469
Mitochondrial biogenesis [BR:
shw03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Sputw3181_3469
Exosome [BR:
shw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Sputw3181_3469
Exosomal proteins of other body fluids (saliva and urine)
Sputw3181_3469
Exosomal proteins of breast cancer cells
Sputw3181_3469
Exosomal proteins of colorectal cancer cells
Sputw3181_3469
Exosomal proteins of bladder cancer cells
Sputw3181_3469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ABM26281
UniProt:
A1RNN6
LinkDB
All DBs
Position
complement(3948601..3950238)
Genome browser
AA seq
545 aa
AA seq
DB search
MAAKEVVFGNDARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEI
ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGI
DKAVIAAVAELKALSQPCADSKAIAQVATISANSDESIGEIIATAMEKVGKEGVITVEEG
QALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGL
AKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTV
IAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDY
DKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALV
RVASKIAELEVLNEDQKHGVVIALRAMEAPLRQIATNAGEEASVVANTVKNGSGNYGYNA
GNDTYGDMLEMGILDPTKVTRCALQFAASIAGLMITTEAMVAEIPQNSAPDMGGMGGMGG
MGGMM
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaagaagttgtatttggtaatgacgctcgcgtaaaaatgttggctggcgta
aacattctcgcgaacgcagtgaaagtgaccttaggccctaaaggccgtaacgtggtatta
gacaagagcttcggctcaccactgatcactaaagacggtgtttctgttgccaaagaaatc
gaattagaagacaaattcgaaaacatgggcgcgcaaatggtgaaagaagttgcttctaaa
gccaacgacgccgccggtgacggtactactactgcaactgtactggctcaagccattgtg
actgaaggcttaaaagccgttgcagccggtatgaacccaatggatctgaagcgcggtatc
gacaaagccgttatcgctgccgttgctgaattaaaagccttatcacaaccttgtgcagat
tcaaaagcgattgcacaagttgcgactatctctgcaaactctgacgaatctatcggtgaa
atcatcgctactgcgatggaaaaagtcggtaaagaaggcgtgatcacagtcgaagaaggc
caagcgctggaaaacgaactggacgtagtagaaggtatgcagttcgaccgtggctacctg
tctccatactttatcaacaagccagaaacaggcagcgttgaattagatcacccattcgtc
ctgttagtagacaagaaaatctctaacattcgcgaactgttacctatccttgaaggtctg
gcaaaaacgggtaagccattgcttatcgttgctgaagacgttgaaggcgaagcattagca
actttagttgtgaacaacatgcgcggtatcgtgaaagtggctgccgttaaagcccctggc
tttggcgatcgtcgtaaggcaatgctgcaagacgtagcaatcctgactggcggtactgtt
attgctgaagaaatcggcctagagcttgaaaaagcaaccctagaagatttaggtacagct
aagcgtgttgtgatcactaaagacaacaccaccatcatcgatggtaacggcgagcaagcg
caaatcgaagcgcgtgtaagccaaatcaagcaacaaatcgaagaatcaacctcagactac
gacaaagaaaaactgcaagagcgtatggctaaattagctggcggcgtagcagttatcaaa
gttggcgcagcgactgaagttgaaatgaaagagaaaaaagcacgcgttgaagatgcgctg
catgccactcgcgctgcggtagaagaaggcgtggttcctggcggtggtgttgctctggtt
cgcgtagcgtctaagatcgctgaacttgaagtattaaacgaagatcaaaaacacggtgtg
gttattgcactgcgtgcaatggaagcgccactgcgtcaaatcgccactaacgcgggtgaa
gaagcgtcagttgttgctaacacagtgaagaatggcagcggtaactacggttacaacgcg
ggtaacgacacttacggcgacatgttagaaatgggtatccttgacccaactaaagtgact
cgttgtgcgttgcaattcgcagcatcaatcgctggcctgatgatcaccacagaagctatg
gttgctgagatcccacaaaattctgcgccagatatgggcggaatgggtggtatgggcgga
atgggcggcatgatgtga
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