Shewanella sp. W3-18-1: Sputw3181_3537
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Entry
Sputw3181_3537 CDS
T00453
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shw
Shewanella sp. W3-18-1
Pathway
shw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sputw3181_3537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shw03019
]
Sputw3181_3537
03009 Ribosome biogenesis [BR:
shw03009
]
Sputw3181_3537
Enzymes [BR:
shw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sputw3181_3537
Messenger RNA biogenesis [BR:
shw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sputw3181_3537
Ribosome biogenesis [BR:
shw03009
]
Prokaryotic type
rRNA helicases
Sputw3181_3537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABM26349
UniProt:
A0A6N3J9D1
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All DBs
Position
4038888..4040810
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AA seq
640 aa
AA seq
DB search
MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSER
QLALFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLE
VENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RSTNSRISPMKIPSPETVAERRLSRLGEQLAETINGDLDFMKEAVAQLCQQLEVDTDLLA
AALLQQVQQERPLQLPAIQERVRDERNERSERSDRGSDRNDRGGERGERRSREPRPMPAS
LGSAEALKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTV
DLPDGMPKDVLQHLRKVRVCGKPLNIREAGDQVFVDSGRSARSDRPAGDRKPRGDRPTGD
RPAGDRKPRAASTGDKPFADRKPRADKPAGERKPRKPRED
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgatgaaagaactttccgtgaactcggcctgtccgagaatttgttgcgtgct
cttgacgagctaggttatgaaaaacccacgccaatccaatcagccagtattgatccactt
atggctggcaaagatattttaggtcaagctcaaacaggtacaggtaaaactggcgccttc
gcgctgccgctacttaacaaagtcaccagccaaactacaccgcaaattttagtattagcg
ccaacgcgtgaattagcggttcaggttgctgaagcatttagtagctatgccaaatttatg
aagaatttccacgttctgccaatttacggcggtcaaagcatgcaacaacagttgaatgcc
ctgaaacgtggtccacaggttatcgtgggtacgccaggtcgtgttatggaccatatgcgt
cgcggtaccttgaaacttgattcattaaaagcactcgtgcttgatgaagccgatgaaatg
ttaaaaatgggcttcatcgacgatatcgaatggatccttgagcacacgccaagcgagcgc
caattggcgttattctctgccactatgccagagcaaattaagcgtgttgctaaccaacat
ttacgcagccctgtgcatgttcgtatcgaatcaagccaaacgacggttgaatcaatcgaa
cagcgttttgtgcaagtgtcacaacacaacaaacttgaagctttagtacgtgtattagaa
gttgaaaacactgaaggtgtgatcatattcgtgcgtactcgtaactcatgtgttgagtta
gctgaaaagttagaagcccgcggttatgcttcatcaccactacacggtgacatgaaccag
caagcccgtgagcgtgcagttgaccaactgaaacgtggcaagttagacattctaattgcg
actgacgttgcggcccgtggtcttgacgttgagcgtattggtcacgttgtgaactacgat
attccgtatgatgccgaagcttatgtgcaccgtattggccgtacaggccgtgctggccgt
actggtatggcgatcctgtttgtgacaagccgtgaaatgcgcatgctgcgcactatcgag
cgttcaactaacagtcgtatttcaccaatgaaaatcccaagtccagagacagttgcagaa
cgtcgtctgtctcgcttaggtgagcaattggctgaaaccatcaacggcgatttagatttt
atgaaagaagctgttgctcaattatgccaacagttagaagtcgataccgatctgctagcc
gcagccttgttacagcaagttcaacaagaacgtcctctgcaattgccagccattcaagaa
cgcgttcgtgatgaacgtaatgagcgcagtgaacgtagcgaccgcggaagtgatcgtaat
gaccgtggtggtgagcgtggtgaacgcagaagtcgcgaaccgcgtccaatgccagccagc
ttaggctcagctgaagcgttgaaagacaacccagatttaaaaatgtgtcgttacgttatc
gacgtaggtcgtgagaatggtgtgggtgtgggtaacatcgttggcgctatcgcgaacgaa
gccaacattgacagccgttacattggcgcaatccaactttacgatgcagtgactaccgtt
gacctgccagacggcatgccaaaagacgtgttacagcacctacgtaaagtacgtgtttgt
ggcaagccattgaacatccgcgaagctggcgatcaagtatttgttgattcaggccgcagt
gctcgttcagaccgtcctgctggtgaccgtaaaccacgtggcgatcgtccaacgggtgac
cgcccagcgggtgatcgtaagcctcgcgctgcgtctacgggtgacaaaccatttgctgat
cgcaaaccacgtgcagacaaacctgccggtgagcgtaagccacgtaaaccacgtgaagac
taa
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