KEGG   Shewanella sp. W3-18-1: Sputw3181_3759
Entry
Sputw3181_3759    CDS       T00453                                 
Name
(GenBank) helix-hairpin-helix motif
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
shw  Shewanella sp. W3-18-1
Pathway
shw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:shw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Sputw3181_3759
   03460 Fanconi anemia pathway
    Sputw3181_3759
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shw03032]
    Sputw3181_3759
   03400 DNA repair and recombination proteins [BR:shw03400]
    Sputw3181_3759
DNA replication proteins [BR:shw03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    Sputw3181_3759
DNA repair and recombination proteins [BR:shw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     Sputw3181_3759
SSDB
Motif
Pfam: ERCC4 HHH_5 HHH_2 HHH UPF0758_N HHH_8 HHH_3 DUF1820 KH_PARP14_4
Other DBs
NCBI-ProteinID: ABM26564
UniProt: A0A6N3J9G7
LinkDB
Position
4305644..4306171
AA seq 175 aa
MGDYQLNDWLIERKTLPDLVQSLCDGRLFSQIARLAASPSHTAQLLEGCTQDIAGYQIRR
EALIGTLCSISINFHIPILRSLSQTETAKILYFCASQLNRRENELTLTGRKPKRKKNQQL
FILQSLPEVDPKLASRLLYHFKNIEAIFTAPEEALIRVEGIGKEKARKIREALTG
NT seq 528 nt   +upstreamnt  +downstreamnt
ttgggtgattatcaactcaatgattggctgattgaacgtaaaaccttgcccgatctagtg
caatccttatgcgatggccgactattttctcaaattgccagactagccgcgagcccaagc
cacacagcccaactcctcgaaggctgcactcaagatatcgcaggttaccagatccgcaga
gaggcacttatcggcacgctgtgctccatttcaatcaatttccatatcccaatactccgc
agtttatcgcaaacggaaacggccaaaatactgtatttttgcgcctctcagttaaaccgt
agagaaaatgaattaacccttacgggacgtaagcccaaacgcaagaagaatcagcaattg
tttatcttgcaaagcctaccagaagtagaccccaagcttgctagccgactgctgtaccac
ttcaaaaatatcgaggccatttttaccgctccggaagaggcattaatccgagtcgaaggc
ataggtaaggaaaaagccagaaagatccgtgaagcactaacgggttga

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