Schistosoma haematobium (urinary blood fluke): MS3_00000941
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Entry
MS3_00000941 CDS
T05004
Symbol
COL4A1_1
Name
(RefSeq) collagen, type IV, alpha
KO
K06237
collagen type IV alpha
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx04512
ECM-receptor interaction
shx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
MS3_00000941 (COL4A1_1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
MS3_00000941 (COL4A1_1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shx04147
]
MS3_00000941 (COL4A1_1)
00536 Glycosaminoglycan binding proteins [BR:
shx00536
]
MS3_00000941 (COL4A1_1)
Exosome [BR:
shx04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
MS3_00000941 (COL4A1_1)
Glycosaminoglycan binding proteins [BR:
shx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
MS3_00000941 (COL4A1_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
24589339
NCBI-ProteinID:
XP_051073065
UniProt:
A0A922LTT2
LinkDB
All DBs
Position
1:complement(9018923..9093590)
Genome browser
AA seq
1764 aa
AA seq
DB search
MGHMSTFSWFVSIFFSVVIIQIGVTQQIDNNDPYRCQRICTPDKCRCIGRKGIEGPFGPV
GAPGTIGLIGERGPPGNPGTKGEKGEAGQLGRQGFKGERGTQGPPGYPGQHGFDGYPGFM
GTKGDKGDPGCYGDPGENGMPGDSGRPGVKGLPGFPGNKGTKGTPGWAERGTIGFPGPRG
DIGPIGEYGFPGQPGPMGDAGNRGLTGLKGFKGARGSPGIKGRPAAPITIEGQKGDKGQR
GPRGSDGYPCTLDIHAQIGPQGPQGPVGFKGDKGDRGSIGNFGEPGFDGPPGIPGEKGLP
GRHGDRGQPGDAGFPGSQGETGKRGLDGEPGRIGELGPKGDTGPPGIDGERGPRGQKGKP
GGYVHCAGPKGMKGLPGFPGLKGLSGDVGREGLPGTDGDKGDTGMKGDRGIPGRGCVDGQ
PGLPGPKGNMGSPGIRGPPGIAGLPGITGLRGQPGDVTEAALPGPSGNPGAPGSFGMKGL
PGDSGDPGEKGFPGAGERGPAGPRGPPGDPGLVGRPGREGRPGIRGPKGVSVAKCLFCED
GQMGRPGDIGEIGDSGLPGRPGANGPDGELGDIGDPGRPGLPGPPGRKGMVGFPGQIGFK
GDPGEPGILRITNQQVLPGDPGNSGYPGAKGEPGDLGNPGSFGARGEIGPKGRMGLPGTP
GIPGPEGDPGDRGLPGDPGLDGRSFVGETGDPGEPGYSGLPGSKGMPGAKGYCDLIQPQL
TKGVSGDRGFPGDPGLPGEQGSQGRSGMKGITGLPGARGIPGDDGRPGVFGFKGERGFPG
PIGRPGFPGLVGTPGLGGFRGEPGFQGPPGPKGQKGIIGEQGDSGRISYASKGIKGLQGV
PGSIGLPGIDGRPGFKGFPGRPGLRGVDGLYGPKGYPGPKGLQGPKGLPSVGRELGAIGV
KGRPGIPGSFGPKGTRGMPGVCDIKGIFGNPGPMGPMGRRGQPGIPGVSGEPGDIGYEGP
LGRRGQKGDRGLSGLPGRIGTRGPKGRSGWAASVGPKGNPGRIGQPGNPGSQGRPGPMGR
QGLKGSPGISGRLVAGAMGEQGPMGIQGIRGEKGISGIHGKTGKPGIPGIQIKGFPGRQG
LPGPSGPPGDSGRPGFAGVRGAKGDQGFSGRMGLKGDIGPPGFPGRDGIPGGSGSKGRSG
SPGFRGDDGEKGESGLIGDPGPTAQMLDGRQGRKGLTGIPGSYGLPGLIGDKGFSGAPGL
PGDEGLPGPRGIPGNPGFKGLPGDPGLPSRFGQPGEVGDRGEFGRPGFQGPFGQKGSFGE
KGDQGLTPSCPIGQPGRRGQPGGAGLPGPDGEKGNRGLPGQRGPKGVRGLTPEPLPGSKG
DMGPVGLDGLQGSFGDPGFPGPSGVKGQPGPVGDPGFRGTQGDPGSRGFPGTPGQDGAPG
RDGFRGNPGRPGNDGPPGMKGLRGLPGNPGFPGIKGAMGSQGPPGTPGQMGVKGFPGRSD
RAQKGVRGDPGSPGATGEPGIPGLPGQRGKQGDPGEKGIKGLPNPIPGPRGPIGDQGPRG
DPGYRGMKGFIGEKGQRGPAGRNGTIGLDDSGFLFTVHSQDSQPPSCPIYTTPVYTGYSL
VTLQGDDDSTTMDLGTPGSCLRKFSIMPFANCFAKVNGHCQVNMRNGRSYWLSTLEQYML
SPARVENIKPYISRCIVCQSRTWLVAFHSQRDDIGQMCPPGWENAWNGFSFPMAIGSSSN
GGVQPLESPGSCLQHFRALPFIECNNHDGNCFHWQDGRSYWMSSIRQNEQFIKPIGTTYK
TETGILQHVSRCSVCRRAMESLLR
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atgggacatatgtcaacatttagttggtttgtatctatatttttctcagtggtaatcata
caaattggtgtaacacagcaaatagacaacaatgatccatacagatgtcaacgtatttgt
actccagataaatgtcgatgtattggtagaaaaggaatagaaggaccatttggtcctgtt
ggagctccaggaacaattggcttaattggtgaacgtggaccaccaggtaatccaggaaca
aaaggtgagaaaggtgaggctggtcaattaggaagacaaggatttaaaggtgaacgtggt
acacaaggacctcctggatatcctggtcagcatggatttgatggttatcctggtttcatg
gggaccaaaggagacaaaggtgatcctggttgttatggtgacccgggagagaatggaatg
cctggcgattctggaagacctggagtaaaaggtttgcctggatttcctggtaataaaggc
actaagggaacaccaggttgggctgaaagaggcacgattggattcccggggccacgtgga
gatattggtccgattggagaatatggttttcctggtcaacctggtccaatgggtgatgca
ggcaatcgtggcttaacgggtttaaaaggatttaaaggggcacgtggttctcctggtata
aaaggtcgtccagcagcacctattaccatcgaaggtcaaaagggtgataaaggtcaacgt
ggtccacgtggcagtgatggttatccttgtacactggatatacatgcacaaattggacca
caaggtcctcaaggcccagttggttttaaaggagacaaaggagatcgcggatcaattgga
aactttggtgaaccaggttttgatggacctcctggaatccctggtgagaaaggtcttcct
ggccgtcatggtgacagaggtcaaccaggtgatgcaggcttcccaggatcacaaggagag
actggaaaacgaggtctagatggtgaacctggtcgaataggcgaacttggtcctaaaggt
gacacaggaccacctggtattgatggagaacgtggtccacgaggtcaaaagggtaaacct
ggaggttatgtacattgtgcaggaccaaaaggaatgaaaggtttaccaggttttcctgga
ttgaaaggactttctggtgacgttggtcgagaaggtttacctggtactgatggtgataaa
ggcgacactggtatgaaaggagatcgtggtatccctggtcgaggatgcgttgatggtcaa
ccaggtctaccaggtccgaaaggaaatatgggaagtcccggtattcgtggtccaccagga
attgctggtctacctggaattactggattgcgtggacaacctggtgatgtaactgaagca
gctcttccaggaccaagtggaaatcctggagccccaggttcatttggcatgaaaggtttg
cctggtgattctggagatccaggagaaaaaggttttccaggagctggggaacgagggccg
gctggaccgcgtgggcctcctggagatcctggtctagttggtagacctggaagagaagga
cgtcctggtatcagaggtccaaaaggtgtaagtgtggcaaagtgtttgttctgtgaagat
ggtcaaatgggtcgtccaggagacattggagaaataggtgatagtggtttaccaggtcga
ccaggtgcaaatggtccagatggtgaacttggagatatcggtgatccaggtcgtccaggt
ttacctggtccaccagggagaaagggtatggtaggattcccaggtcaaattggctttaaa
ggcgaccctggtgaacctggaattctaagaattacaaatcaacaagtactaccaggcgat
ccaggcaatagtggttatccaggtgctaaaggagaaccaggtgacttaggtaatccaggt
tcatttggtgctcgtggagaaatcggacctaaaggacgaatgggtcttccaggcactccc
ggtataccaggacctgaaggtgatcctggtgatagaggacttccaggtgatcctggatta
gatggtaggtcgtttgtcggtgaaactggagatccaggagaacctggatattctggactg
cccggttctaaaggtatgccaggagcgaaaggttattgcgacctaattcaaccccagtta
actaaaggcgtctcaggtgatcgcggtttccccggtgatcccgggctccctggtgaacaa
ggctctcaaggaagaagtgggatgaaaggcattactgggctacctggagctcgagggatt
cctggagatgatggtcgtcctggagtgtttggttttaaaggtgaacgaggtttccctgga
ccgattgggagacctggttttccaggtctggtcgggactcctggtttaggtggttttaga
ggtgaacctggattccaaggacctccgggtcccaagggtcagaaaggtataattggagaa
caaggggattctggcagaatctcttatgcaagcaaaggtataaaaggtcttcaaggtgtc
cctggatctatcggtctacctggtattgatggtaggcctggttttaaaggtttccctggt
agaccagggttaagaggtgtggatggtttgtatggtccaaaaggatatccaggtccgaaa
ggcttacaaggtcccaaaggtttaccaagtgtcggtagagaattaggtgcaatcggtgtt
aaaggcagacctggtataccgggatcattcggaccaaaaggaacacgtggaatgccaggt
gtttgtgatatcaaaggtatatttggaaatccgggtccaatgggtccaatgggccgtcga
ggtcaacctggaatcccaggtgtttctggtgaaccaggagatataggttatgaaggacca
ctaggaagacgtggacaaaaaggtgaccgaggtcttagtggtttgcctggaagaattgga
acccgtggaccaaaaggacgaagtggatgggcagcttcggttggaccaaagggaaatcct
ggaagaattggtcagcctggaaatcctggttcacagggcagaccaggtcctatggggaga
caaggtttgaaaggttcacctggaatatctggaagattagttgctggtgctatgggtgaa
caaggacctatggggatccaaggtattcgcggggaaaaaggcattagtgggattcatggc
aaaaccgggaaacctggtattcctggaatacaaataaagggatttccaggtagacaaggt
ctgcctggaccatctggtcccccaggtgattcaggaaggccaggatttgcaggcgtacgt
ggagctaagggtgatcaaggtttttctggacgtatgggactcaaaggtgatattggtcct
cctggattccctggaagagatggcattcctggaggttcaggaagcaaaggacgaagtggc
tccccaggttttcgaggagatgatggagaaaaaggtgagagcggtttgatcggtgatcct
ggaccaactgcacaaatgctggatggtcgacaaggaagaaaaggtcttactggaatccct
ggatcgtatggtttgccgggtttaatcggtgataaaggcttttctggagcaccaggtttg
cctggagatgaaggactgcctggaccacgtgggattcctggaaatcctggtttcaaggga
ctgccaggagatcctggtttaccaagtcggtttggacaaccaggggaagtgggtgatcgt
ggtgagtttggccgccctggtttccaaggtccatttggtcaaaaaggtagttttggagaa
aaaggagatcaaggtttaacaccatcctgtcctattggacaaccaggtagacgaggacaa
ccaggtggagctggcctaccaggaccagatggcgaaaaaggcaacagaggtctacctggg
caacgaggtccgaaaggtgtgcgtggtctgacgccagaaccacttcctggatcaaagggt
gatatgggtccagtaggccttgatggattacaaggttcattcggtgatcctgggtttccc
ggacctagtggagtgaaagggcagccgggaccagttggggacccgggatttcgcggtaca
caaggggaccccggtagtcgtggttttcccggaactcctggtcaggatggagcacctgga
agagatggttttcgcgggaaccctgggcgccctggcaacgatgggcctccaggaatgaag
gggcttcgtggtttgcctggcaatcctggtttcccaggaataaaaggtgctatggggtct
cagggtcctcctggtactcctggccaaatgggtgtcaagggtttcccaggccggtcagat
cgtgcacaaaaaggtgttcgtggtgatccaggctcacctggagcaacaggtgaacctggt
attccaggattgccaggacaacgtggcaaacaaggtgatccaggagaaaaaggcattaaa
ggattgcctaacccaattcctggtcctagaggtcctataggcgatcaaggtccacgtggt
gatcctggttacagaggaatgaaaggttttattggtgaaaaaggtcaacgtggaccagct
ggaagaaatggaacaatcgggctagatgatagtggatttcttttcactgtacattctcag
gattcccaaccgcctagttgtccaatttatacaacaccagtttatactggctacagtctt
gttacacttcaaggtgatgatgattcaacaacaatggatttaggaacacctggttcatgt
cttagaaaattcagcataatgccatttgcaaattgttttgctaaagtaaacggtcattgt
caagtgaatatgagaaatggacgttcatattggttatcaacattagaacaatatatgctt
tctccagcccgtgttgaaaatattaaaccatatatttctagatgtattgtttgccagtct
agaacttggttagtagcatttcattctcaacgtgatgatattggtcaaatgtgtccacct
ggttgggaaaatgcatggaatggtttcagttttccaatggcaattggatcatcatcaaat
ggtggtgtacaaccattagaatcacctggtagttgtttacaacattttcgtgctttacca
tttattgaatgtaataatcatgatggaaattgttttcattggcaagatggacgatcttat
tggatgtctagtattagacaaaatgaacaatttattaaaccaattggtactacatataaa
acagagacaggtatcttacaacatgttagtcgttgtagtgtatgtcgacgtgcaatggag
tcattattacgttaa
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