Schistosoma haematobium (urinary blood fluke): MS3_00002072
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Entry
MS3_00002072 CDS
T05004
Symbol
RFC1_1
Name
(RefSeq) replication factor C subunit 1, variant 2
KO
K10754
replication factor C subunit 1
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03030
DNA replication
shx03410
Base excision repair
shx03420
Nucleotide excision repair
shx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MS3_00002072 (RFC1_1)
03410 Base excision repair
MS3_00002072 (RFC1_1)
03420 Nucleotide excision repair
MS3_00002072 (RFC1_1)
03430 Mismatch repair
MS3_00002072 (RFC1_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shx03032
]
MS3_00002072 (RFC1_1)
03400 DNA repair and recombination proteins [BR:
shx03400
]
MS3_00002072 (RFC1_1)
DNA replication proteins [BR:
shx03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
MS3_00002072 (RFC1_1)
DNA repair and recombination proteins [BR:
shx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
MS3_00002072 (RFC1_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MYG1_exonuc
RFC1
AAA
BRCT
AAA_22
BRCT_2
Rad17
PTCB-BRCT
nSTAND3
RCF1-5-like_lid
TIP49
AAA_30
RuvB_N
DUF4769
DUF2927
AAA_16
Motif
Other DBs
NCBI-GeneID:
24591120
NCBI-ProteinID:
XP_012795052
UniProt:
A0A094ZKY0
LinkDB
All DBs
Position
1:complement(9699689..9735529)
Genome browser
AA seq
1327 aa
AA seq
DB search
MVLNYFLIKPLDNQISCRDNSQQSIIDALRRQQELCKINRGKKANTIEAYFSQSVKPKKN
VVSVDDFFVPSRTKSNAKPSAVVSTPPHSPMEIIPDTPILSPKTPLGTRGSYKSSPQINV
ISEGVKTTSNQTSSMVNESLNDSTDTAVKDRKHFWAYKARDGPRSLGSREIPKGTPDCLK
GLNFLITGILECIEREDAANLIQNCGGKVLKTLGKKTDYLVVGREPGAAKIEKANNLKIK
QITEEHLFEMIEKSSNIPLVNHKSDVSSSESSKKLEPVDANDSKQNLKSPKKSPKKNQST
KSPDSAPKSHKHESPNKCAGKSVMSSCSELPLTARPVLTNNSTFNNKTDRSHSSGLSKTP
TNVIDKQDSLSKEMSSKLSELWVDKYKPTSIRSLIGQNGAQSPANRLLNWLSSWHSSFSA
GLKAKAYSSAPPWGPSSSDDGKWARAALLSGPPGIGKTSTAILVCKELGYTYCEFNASDC
RSKRCLSEEIGQSLGLRNLSHMAFGQASTLNSGRHVLIMDEVDGMAGNEDRGGMQELINM
IKITQLPIICMCNDRQAIKIRSLANYCLDLRFHRPRVEQIKSAVLSIACKENMNLPPDVL
TNIIDSSNHDIRQVINNVQMWCSSGLIDSEGLKADALGARKDLHLNAFDVIRKVFAPDIS
GSQGSVATFNESLDLFFQDYNLIPLFVEENYLNVRVHNTHDDKKILQLMSQAASDIATAD
IISSTIRSSRTGSWSLLPVQGVFSTVSPGRTLRGSLPGGPGGVSFPSWFGKNSTQSRINR
TTSELAAHLRLATHCGSSNPLTLLLDYATPISELITRPLKEGDIDSAIQFLINYQITRED
VDSIMELTTWPNRPNRMLSVDSKVKAALTRTYNKSSHLLPYVISSSGSFKRKRGGAPVSF
EGEIENDSGLFDDDDDDEEEQEDEKVDLKNDAMILVKKEDPKKRINTEKSKLQRGEQCPS
SDGNNTKERGRGRGRANNISLLSMVANSKLRIGTHDGRFHADEILACAMLKHLPEYSNAE
IIRTRDSSILSTCDIVVDVGGVFNAENHLYDHHQREFNLTYKDFYPNSDWDIKLSSAGLI
YVHFGRKILSCILGIDENTMDPLVTALFHKMYSSFVVEIDAIDNGVPMAITPLRYSMNTS
LSSRVNRMNPAWNQLDTDETICFHNALQLVDKEFITLVHFYADTWYPAREIVLNAVKNRY
SIDSSGTIIYIEGTGCPWNAHFFEIEKSLLLNNVNEIEKQNQILFVIYQRKDSTWTIQAI
PLNEHNNFSQRLPLPESWRGLRDEQLSSIVGLPDCIFVHSTGFLGVHKTRDGVLQMARLT
IKMKENQ
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atggtattaaattacttccttataaagcccctagataatcaaatatcctgccgtgataac
tcccagcagtcaataatcgacgctttacgacgacagcaagagttatgcaaaatcaaccgt
ggcaagaaagcaaatactattgaagcgtacttctcacagtctgtgaaacccaagaagaat
gtagtttccgttgatgatttcttcgtaccatctagaacaaaatcgaatgctaagccttct
gctgtcgtcagcacaccacctcattcaccgatggagatcatcccggatacaccaatatta
tctccgaaaacacctctggggaccagaggaagttataaaagctcaccccaaatcaatgtt
atctcggagggtgtgaagacaactagtaatcaaacgtcatccatggttaatgaatctctt
aatgatagcactgatactgctgtaaaagatcgaaagcatttttgggcctacaaagctcgc
gatggtcctcgcagtcttggatcaagagaaattcctaagggaactccggattgtttaaag
ggactaaactttctcatcactggaatactagagtgtattgaacgagaggacgctgcaaat
cttattcagaattgtggtggaaaagttttaaaaacattgggtaaaaagactgattatctc
gttgtcgggcgtgaacctggtgcagccaaaatcgagaaggctaacaatttgaaaattaag
cagattaccgaagaacatctctttgaaatgatagaaaagtccagtaatattcctcttgta
aatcataaatcggatgtatccagctcagaatcttccaagaaattggagcctgtagatgca
aacgatagtaaacaaaatttaaaaagtcctaaaaaatcccctaagaagaatcaatctacc
aaatcaccggatagtgctcctaaatctcataaacatgaatctccgaataaatgtgcagga
aaatctgttatgtcctcatgtagtgaacttcctcttactgcacgtcctgttttaactaat
aattcaacattcaataataaaactgatcgaagtcatagcagtggtttatccaaaactcct
actaatgtcatcgataagcaagattccctgtccaaggagatgagttcgaagttgtctgaa
ttatgggttgataagtataaaccaacgtctattcgctcactgattggtcaaaacggtgca
caaagtccagccaatcgacttttaaattggctatcttcctggcactcgagtttttcagca
ggtttaaaagcgaaggcttactcaagtgcccctccatggggcccgtcatctagtgatgat
gggaagtgggcgcgcgcagcacttctttcgggacctccagggataggcaaaacatcaacc
gctattttagtatgcaaagaactcggttatacttattgcgaatttaatgcatccgattgt
cgatccaagcggtgtttaagtgaagaaataggacagtctttgggtctacgaaatttgtca
catatggcgtttggtcaagcatcaacattaaattctggtcgtcacgttttaattatggac
gaagtagatggtatggctggtaatgaagatcgcggaggaatgcaagaacttattaacatg
attaaaattactcaattacctattatttgtatgtgcaatgatcgtcaggctataaaaata
cgctctctggctaattattgtctcgatttaagatttcatcgtccacgagttgaacaaata
aagtcagcagtattgtctattgcttgtaaagaaaatatgaatttacctccggatgtatta
acaaatattatcgattctagtaatcatgatattagacaggtaattaataatgttcaaatg
tggtgtagctctggtttaattgattccgaaggattaaaagcggatgcattaggtgcacgt
aaagatctacacttaaatgcatttgatgtgattcgtaaagtttttgcaccggatatttct
ggttctcaaggcagtgttgctacattcaatgaaagtttagatttattttttcaagattac
aatttaattcctttgtttgttgaggaaaattatcttaatgttagagttcataatacccat
gacgataaaaaaattttgcaattaatgtctcaagcagcgtctgacatcgccacggcagat
atcatttcatctactatcagatcatcacgtacgggatcatggtctttattacctgttcaa
ggtgtgttcagtacagtttcacctggtcgtactcttcgtggctctttacctggtggccca
ggtggtgtttcatttccttcttggtttggtaagaacagtacacaaagccgtatcaatcgg
actacttcggaattagctgcacatttacgattagcaactcattgtggttcatcaaatccg
cttacattattgctagattatgctacaccaatctctgaacttatcactcgtccacttaaa
gaaggtgatattgacagtgctattcaatttctaattaattatcaaataacaagagaagat
gttgattctataatggaattaactacttggccgaatcgaccgaatcgaatgcttagtgtt
gattcgaaagtcaaagctgcattaacacgtacgtataataaatcatcgcatttactaccg
tatgtcatctcatcaagtggttcctttaaacgtaaacgtggtggtgctccagtttcattt
gaaggggaaattgaaaatgattctggtctattcgacgatgatgatgatgatgaagaagaa
caggaagacgagaaagtcgacctgaagaatgatgccatgattttagttaaaaaagaagat
ccaaaaaagcgcataaacactgagaaatccaaattacaacgaggagagcaatgtccatct
tctgatggcaacaatacaaaagaacgtggtcgaggtcgtggtcgcgctaacaatatttcg
ttgttatcaatggtagctaattcaaaactgcgtatcggtacacatgatggacgattccat
gcagatgaaatacttgcatgtgcaatgcttaaacatttaccggaatactcaaatgctgaa
attatacgcacaagagattcaagtattttgtcaacatgtgatatcgtcgttgacgttggc
ggtgtattcaatgctgaaaatcatctatacgaccatcatcaaagagaattcaaccttact
tataaagatttttatccgaattctgattgggatataaaactaagtagtgcaggtttgata
tacgttcatttcggtcgaaaaatactaagttgtatacttggtatagatgaaaatactatg
gatccattagtgacggcactttttcataagatgtatagttcatttgttgttgagatagac
gctatcgataatggtgttccgatggcaataacacctttaagatattctatgaatacatct
ttaagtagtcgagtgaatcgtatgaatccagcttggaatcaattggatacagatgaaact
atttgttttcataatgcattacaattagttgataaagaatttattacattagttcatttc
tatgctgatacatggtatccagctcgtgaaattgtattaaatgctgtgaaaaatcgatat
tccattgattcatctggtacaataatttatattgaaggtactggatgtccttggaatgca
catttttttgaaattgaaaaatctttattattaaataatgtaaatgaaattgaaaaacag
aatcaaattctatttgttatttatcaacgtaaagatagtacatggactatacaagctata
ccattgaatgagcataataatttttcacaaagacttcctctacctgaaagttggagaggt
ttacgtgatgaacagttaagtagtattgttgggctgcctgattgtatatttgtacattct
actgggttcttaggtgtacataaaactcgtgacggtgttctacaaatggcaagattaacc
ataaaaatgaaagaaaatcagtaa
DBGET
integrated database retrieval system
