Schistosoma haematobium (urinary blood fluke): MS3_00002926
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Entry
MS3_00002926 CDS
T05004
Symbol
NCBP1
Name
(RefSeq) Nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03013
Nucleocytoplasmic transport
shx03015
mRNA surveillance pathway
shx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MS3_00002926 (NCBP1)
09122 Translation
03013 Nucleocytoplasmic transport
MS3_00002926 (NCBP1)
03015 mRNA surveillance pathway
MS3_00002926 (NCBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shx03019
]
MS3_00002926 (NCBP1)
03041 Spliceosome [BR:
shx03041
]
MS3_00002926 (NCBP1)
Messenger RNA biogenesis [BR:
shx03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
MS3_00002926 (NCBP1)
Spliceosome [BR:
shx03041
]
Common components
Common spliceosomal components
Cap binding complex
MS3_00002926 (NCBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
Motif
Other DBs
NCBI-GeneID:
75577038
NCBI-ProteinID:
XP_051070597
UniProt:
A0A922LMW3
LinkDB
All DBs
Position
ZW:18421644..18450553
Genome browser
AA seq
1014 aa
AA seq
DB search
MRRKRRSDSFDEDDFRSKRDRTEPDTIESLIYRIGFKDLSNIERDIGELASVILADIPKN
GEGLLKVLSNCVKNVPERILIYATLVGLLNLKNRSFVGQLIELLQRDLKDAIRSASFEDA
KYIVLFLSVSVNCHTVQKASILGLYENFAEVTLDAGRSSQARTDWYTYVILYGLPYSGYL
LASYDTSALNDILGTIEVYMTKRQCPHVSLLRVWESNDPHPQEDYLDCLWAQICNLRNSG
WVEKVTWRLYDSFPSLKEHGQPHKLSPLTPPDYDAEVIYPLPSVVFRMFDYTDVIDQDEN
EIVPNSDLSSDGVKSNKETPVLPGAHTIERFLIDEHLAILMNNLSFNRVMCAKALLGLKT
RAKVALDYMIIEAVFAGMFHLPRPPVQHGNLLFYGSLLVQLCHEASNTIPLVLAQATEVL
FERLDNMKPVCIGRFIEWFSYHLSNYQLQWSWKEWSSSLTLDPMSPQKRLITETLCRLIR
FSYYENVKRLLPKSFYIMLPPQPAVINKYESNPDLSSARAFFRLVDSIRARLEPQTVLRI
AETASQSRGRRLSLSEPFDNDGVRDEKDEDASSDDSHSDHSDEERRGRSPIDTIPLSDPE
FDDLDDPEPAKQEIRARLKARRRMLRESAMKRNLKISSEGNADEQVGVRSDSIEKLPFTT
AAQVSELSPGVTNLAIELFYSAMLIAGHKTISHTFAFIKKYAAVIRTLTSTVETQVEALH
VIQTVWANNPQMIVIITEHMCRVGLIDPEAVVRWAYSPIMTTLTDDTVNLNSANARPKIL
DFYVWECLSRTLVRVGRRVTRITSRLELAKETMEINRRSSPYSTPDREDADQGGDGDSFP
RTGVDSDSFFKKPKDSISGRIKVSDRRKLMAGCELVSSSDDEAYGGGKDNVGGRVARLEE
ARCEAVRSQCAVITLLLHRHARLTAELASEMSGSTQNHSFNTDSPFFLHEPTQPKSLSDE
ALRNIMFWLKGRLVQVVLEHCDQLIPYLDNLDEFICGAHPEVQGVFQQLRSLYA
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggaagcggcgttccgattcgtttgatgaagatgactttagatcaaaaagagac
aggacagaaccagatacgattgaatctctcatatatcgaatagggttcaaagacctttct
aatatagaacgggatattggagaactcgcgtcagttattctagcagatatcccaaagaat
ggagagggccttttgaaagttctgagcaattgtgtaaagaatgttccagaacgaatacta
atttacgcaacgttagttgggttgctgaatctgaaaaatcgatcgtttgtcggccaattg
atagaacttctacagcgagacctgaaggatgctattagatcggcgagttttgaggatgct
aaatatatagttttgttcttgtcagtatctgttaactgtcatactgttcagaaagcatcc
attctcggtctgtacgaaaattttgctgaagtcactcttgatgcaggacgaagttctcag
gctcgaactgattggtacacatacgtgattctttacggtctaccatacagtggttacttg
ctagcttcttatgacacttcagcattaaacgatatattaggtacaattgaagtttacatg
actaaacgccagtgcccccatgtctcattattacgcgtttgggagtcaaatgatcctcac
ccacaagaagattatctggattgtttgtgggctcaaatatgcaatctccgaaatagtggt
tgggtggaaaaagtaacttggagattatatgactcttttcctagcttaaaagaacatggt
cagccgcataaattatcacctctcacacctcctgattatgatgcggaggttatttatcct
cttccatctgtggtttttcgaatgtttgactatactgatgtaatagatcaagatgaaaac
gagattgttcctaattcagatttatcatcagatggagttaaatctaataaagaaactcct
gtccttccgggagcacatactatcgaacgattccttattgatgaacatttggcaattttg
atgaataatttaagtttcaacagagttatgtgtgctaaagctctgttgggactcaaaact
cgagccaaagtagctttagattacatgatcattgaagctgtttttgctggaatgtttcac
ttacctcgtccaccagttcaacatgggaatcttctgttttatgggagtttactagtacag
ttatgccatgaagctagtaatacaattcctctggtgttagctcaagccactgaagtccta
tttgagcgtttagataatatgaaacctgtttgtattggcaggtttattgaatggttttca
tatcatttaagtaattatcaattgcaatggagttggaaagagtggtcctcatctctaact
ctagatccgatgtctccacaaaaacgtttaattaccgaaacattatgtcgattaatacgt
ttttcatactacgagaacgtcaaacgtttacttccgaaatctttttatataatgttacca
cctcaacctgcggtaatcaataaatatgaaagtaatccagatttgtcttctgcacgtgca
ttctttcgtctagtggattctatccgagcacgccttgaaccccaaaccgtcttaagaata
gctgaaactgcctcacaaagtcgtggtcggcgtctttcactatcagaaccatttgataat
gatggggtaagagatgaaaaagatgaagatgcatctagtgatgatagtcactctgatcat
agtgatgaggagcgtcgtggaagaagccccattgataccattcctctgtcagatcctgag
tttgatgacttggatgatcctgagcctgctaaacaagaaattcgtgctcgtcttaaagcg
cgtcgacgaatgttacgggagagtgcaatgaaacgtaatttgaaaatatcgtcagaaggt
aatgccgatgaacaggtcggtgtaagaagtgattctatcgaaaagttgccatttaccaca
gcagctcaagtgtctgaactttctcctggagtgacaaatttagctattgaattattttat
tctgctatgttgatcgctggtcataaaacaatcagtcacacatttgcgttcataaaaaag
tatgctgctgtcatccggactcttacatctactgttgaaactcaagtagaagctttacat
gtaattcaaacggtttgggctaataatccacaaatgattgtcattattacagaacatatg
tgtcgtgttggtttgattgatccggaagcagttgttcgatgggcatattcacctataatg
acaacgttaacagatgatacagtcaatttaaactctgctaatgctcgtccaaaaattttg
gacttttacgtttgggagtgcttaagtcgaactcttgttcgtgttggtaggcgagttact
cgaattacaagtagactagaactggcaaaagaaacgatggaaattaacaggcgttcttct
ccttattcgactcctgatcgtgaagacgctgaccagggaggagatggtgatagctttcca
cggactggagtcgacagtgattcattcttcaagaaaccgaaagattccatttctgggaga
attaaagtcagtgaccgacgaaaacttatggcaggctgtgaactggtttcttcgtctgac
gatgaggcttatggtggaggaaaggataatgttggtggtcgagtagccagactagaagaa
gccaggtgtgaagcagttcgtagtcaatgtgctgtcattacacttcttctgcatcgtcat
gctagacttactgctgaacttgcatctgaaatgtctggatctactcagaaccattcattc
aatacggattctccatttttcttacatgaaccaactcaaccgaaaagtttgtctgacgaa
gctttacgaaatataatgttctggttaaaaggtcgtttagtgcaagtggttcttgagcat
tgcgatcaattaataccttatctggataaccttgatgaatttatctgtggagctcatcct
gaagttcaaggcgtgttccaacagcttcgttcattgtacgcatag
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