KEGG   Schistosoma haematobium (urinary blood fluke): MS3_00004220
Entry
MS3_00004220      CDS       T05004                                 
Symbol
POLR2I_2
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
shx  Schistosoma haematobium (urinary blood fluke)
Pathway
shx03020  RNA polymerase
shx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:shx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    MS3_00004220 (POLR2I_2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    MS3_00004220 (POLR2I_2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shx03021]
    MS3_00004220 (POLR2I_2)
   03400 DNA repair and recombination proteins [BR:shx03400]
    MS3_00004220 (POLR2I_2)
Transcription machinery [BR:shx03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     MS3_00004220 (POLR2I_2)
DNA repair and recombination proteins [BR:shx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      MS3_00004220 (POLR2I_2)
SSDB
Motif
Pfam: Zn_ribbon_TFIIS Zn_ribbon_RPB9 Ogr_Delta DUF3716 CpXC Gmx_para_CXXCG Zn_ribbon_SprT RYYR-CCHC Zn_ribbon_IS1595 Zn_ribbon_GRF_2
Other DBs
NCBI-GeneID: 24597856
NCBI-ProteinID: XP_051072922
LinkDB
Position
1:complement(3231905..3240142)
AA seq 103 aa
MLYPKEDKRTKTLYYACRNCDYSQEADNPCVYINKLEQEVDELALIVPDVVHDPTLPRTE
DHICRRCGKQEAVFFQSQTLKAEENMRLYYVCTNVDCLHKWTE
NT seq 312 nt   +upstreamnt  +downstreamnt
atgttgtatcctaaagaggataagcgtacaaaaacattatactacgcatgtcgtaactgt
gattattcccaggaagcagacaatccctgtgtttatatcaacaaactggaacaggaagtt
gatgaattggctttaattgtaccggatgttgttcatgatccaacactgcctcgaacagaa
gatcatatatgtcgtcgatgcggtaaacaagaagctgtattttttcaatcacagacattg
aaagcggaagaaaatatgcgtttatattatgtttgtaccaatgttgactgtttacataaa
tggactgaatag

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