Schistosoma haematobium (urinary blood fluke): MS3_00006397
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Entry
MS3_00006397 CDS
T05004
Symbol
SUPT6H_1
Name
(RefSeq) Transcription elongation factor SPT6, variant 2
KO
K11292
transcription elongation factor SPT6
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shx03021
]
MS3_00006397 (SUPT6H_1)
03036 Chromosome and associated proteins [BR:
shx03036
]
MS3_00006397 (SUPT6H_1)
Transcription machinery [BR:
shx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
MS3_00006397 (SUPT6H_1)
Chromosome and associated proteins [BR:
shx03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
MS3_00006397 (SUPT6H_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
HHH_9
Tex_central_region
SPT6_acidic
S1
Spt6_S1
SH2
Tex_N
HHH_3
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
24588215
NCBI-ProteinID:
XP_035588192
UniProt:
A0A6A5DAQ6
LinkDB
All DBs
Position
2:complement(19526510..19548447)
Genome browser
AA seq
1565 aa
AA seq
DB search
MSSLLDSEASEASELSDLDDDDIVKKKLDKRPALDDPDSSDSDEEEEDLANEEEICRKEG
EGWIVDEEEDEGGASEGSDGDDAEEVGDEGDKDDDDDALDDDDFQLIQENVGINLKKQKK
RRLVLDDDDEADEDEVVSKKATYEEDRGREAIARQIFEDEDEEFDEDRVVRSRPTDFGVS
VGDEEEEEDEDDMGDFIVDDRTGAPPTRPSKRIVHKDAALQQAQNIFGVDFDLSEFEAFR
KSRVGGDDYSDESEYEYSDEEEGSKARRSKHRRAPSNLVMDDRVYELFDPSDLERAYYSQ
ADERIRKTDVPERFQLRQVPVKYIDSCSATYTQDLQELSDEAEWIYRHAFKEDAEYKPPG
VIPKILESLKLMREFLFEVPFIAFYRKECIEKDLNIKDLWRIYQMDEKWTILHQRKRNMI
NLLQRLSDYFEALTTEDAVRSLKKHCSSVLKLIACARSADSLEELFDVRLNYLLHFSGYV
EPMNRWYARQKKGGEGEQSEEQEYDETNVEKAIPITTTIDPITGRSIRQRQARATASYEV
AKRAGIGDLVQRFGLSASQFAENVQDQYLRHDVDQCPMLPIDAAGDFLSPQFPNSELALS
AARYMLAFEISREPLVRKMMRQMFNLQAVISMRPTERGAKHIDESHPLFQIKYLSNKPVA
DLMGNALFLHIHNAERDKLVQYEIHVPTEQIRGLSLVDELQRFFYQDEFSSLVQAWNEQR
NLVLKQAAEEFIFPGLVRELRQKLLNESQQAVLRMCAKKLFNYLRIGPYPPDGHRSYEMD
TEETASSFVNNRHKSDFHTSGDINSRSSGAVWPKGARVLALALKNEDDSRKSMVTAVQLD
CNGEVVDFLHFHGLLVSRRAPEEMKKIKEEDMQRLSTFMVKHKPQVCVIGCDCRKALFLQ
EDIQHLVNELANERRLPRIHVELMETELSIVFALSSRASFDLPISYPLLLRQAISLGRRL
QDPLFEFAQLVTIENEILGIRWHPLQDSLPRDMLLRALEIEFINRVNEVGVDVNRCLSHP
HSAGVIQFISGLGPRKGLHMLKILKHKKTHLTNRMQLVTMIEFGPRVVINCAGFIKIDTS
SVRDLDADDVDLLDSTRVHPESYDLAKKMAVDALEYDDTEECDPTVALEEIVHSPARLRE
LDLDAFAEELKRQEHGDKHITLYDIRKELNNRYRDYREAYQSANPESIFSMVTHETPETL
HVGRLVECRVLSVATRRPRPEQLDNANPTKNEINGLWMCPFCQQDNFQLLNHVWSHFDNN
ECPGQPVGLRVQLDNGIDGFIPLKFMDSPDKLFERTQPGSLVQCRVTKIDITRFNVELTC
KSAELKDERHIWRPRQDAFYDFEKEEKDLRSEAEAMAKAKAKTNPYMSRLIFHPYFKNIS
YDQLAAMEPELEPGAIIIRPSRKGTDHLTVSWKIDDGIMQHIDVSEKEKSNSFSLGKLLI
IGDEEFEDLDEIVARHVQPMASLVRDVMTYKYYRDSSGGDRAHLNALLQHEKSLNPDRIP
YFLSSTKERPGYFILAYLPNKNPHFELFSTRPEGFKFRQLIFPTLDRMITWFKEHYNDAV
NYYRG
NT seq
4698 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctcttttggactctgaagcttctgaggcctctgaactttccgacttggatgac
gacgatatagtgaagaagaaactggacaagcgccctgccctcgatgatccagattccagt
gatagcgacgaagaagaagaagatttagctaatgaggaagaaatctgtcggaaagaaggc
gaaggctggattgtggatgaggaagaagacgaaggtggtgcatccgaaggctctgatgga
gatgatgctgaggaagttggggacgaaggagacaaggatgatgacgacgacgctttggat
gatgatgattttcaactcatccaagaaaatgttggtatcaatttgaagaaacagaaaaaa
cgaagattggtgcttgacgatgacgatgaagcagatgaagatgaagttgtatccaagaaa
gcaacctatgaagaggatagaggaagagaagctattgcacgtcaaatctttgaagacgag
gatgaagaatttgatgaagacagagttgttcgtagcaggccaactgattttggtgtgtca
gttggtgatgaagaagaggaggaagatgaggacgacatgggagactttatcgtggatgat
aggacgggtgctccacccacaagaccttccaagcgtatagtacataaagatgcagcactc
caacaagctcaaaatattttcggtgttgattttgacttatcggagttcgaagcattccga
aaatcacgggttggaggcgatgactacagtgacgagtcagaatatgaatattcagacgaa
gaggaaggctctaaagctagacgatcaaaacaccgccgggcaccttcgaatctggttatg
gatgatcgtgtttacgaactttttgatcctagtgatcttgagagagcctactacagccag
gcagatgaacgcattcgaaaaactgatgttccagaacgctttcaacttcgtcaggttccc
gttaagtacattgattcctgttcagcaacatatactcaagatctgcaggaactttctgat
gaagccgagtggatctatcgtcatgctttcaaagaagatgcggaatataagcctcctgga
gttatacctaaaattctcgagtccttaaaacttatgagggagtttttgtttgaggtccct
tttattgcattttaccggaaagaatgcatagaaaaggacctgaatattaaagacctttgg
agaatatatcaaatggacgaaaaatggaccattttgcatcaacgcaaaagaaatatgatt
aatcttcttcaacgcttgtcagattattttgaggctctcaccacagaagatgcggtcagg
tcactaaagaaacattgttcttcggtactgaaattaattgcatgtgctcgtagcgcagat
tctttagaggagctgttcgacgtccggttgaattatctgcttcacttttctggatatgtc
gaaccaatgaaccgttggtatgcgcgtcagaaaaagggaggcgagggggaacaatctgaa
gaacaagaatacgatgaaacaaatgttgaaaaagctatcccgattacaacaactatcgac
ccaataactggacgatctattcgtcagagacaggctcgtgcaactgcttcatatgaggtg
gccaaacgagctggtataggtgatcttgtacaaagatttggtctttcggcgtctcagttt
gctgaaaatgttcaggaccagtatcttcgccatgatgttgaccaatgccctatgttacct
attgatgcagctggtgactttctgtccccacagtttcctaattctgagttagcactgtct
gcagctcgttatatgcttgcatttgaaatttctcgtgagccacttgttagaaaaatgatg
cgccaaatgtttaatctacaagctgtaatcagtatgcgtcctactgagagaggggctaaa
catatagacgagtctcatccactttttcaaattaaatatctttctaacaaaccagttgct
gatttgatgggtaatgcacttttccttcacatacataatgctgaacgtgacaaactagtg
caatatgaaattcatgtgccaaccgaacaaattcgaggtttatcgttagtagatgagctt
caacgtttcttttatcaagacgaatttagttcattggttcaagcatggaatgaacaacgt
aatctagttcttaaacaggctgctgaagaatttattttccctggacttgtacgtgaatta
cgacagaagttactcaatgaaagtcaacaagctgtactgagaatgtgtgccaaaaagttg
tttaattaccttcggataggtccctatcctcctgatggacatcgttcgtatgaaatggat
acagaagaaactgcttcttcttttgtcaataatcgtcacaaatcagattttcatactagc
ggagacattaattcccgttctagtggagctgtttggccaaagggagctcgtgttttggct
cttgcactaaaaaacgaggatgatagtcggaagtcaatggtgactgctgttcaactagac
tgtaatggtgaggttgttgattttcttcatttccatggtcttttggtatctcgtcgtgct
ccagaagaaatgaaaaaaattaaggaagaagatatgcaacgcctttcaacatttatggta
aaacacaaacctcaagtttgcgtcatcgggtgcgattgcagaaaggccttgtttttgcaa
gaagacattcaacatcttgtaaacgaattagcgaatgagagacgtctaccccgtattcat
gttgaattgatggaaacagaactctctattgtttttgctctttcttctcgtgcctcattt
gatttacctatatcgtaccctttacttcttcgtcaagctatctctttaggaaggcgtctg
caggaccccttatttgaattcgctcaactagtaactattgagaatgaaattcttggtatc
agatggcatccactacaagattctcttcctcgtgatatgttacttcgggcattagagata
gaattcattaatcgagtgaacgaggttggagttgatgtgaatcgttgtttgtctcaccca
cattctgctggagttattcagtttatttcaggacttggacctcgcaagggcctacacatg
ctaaagattctaaagcataaaaaaactcatctaaccaatcgtatgcagttagtaacaatg
attgaatttggtccacgggttgtgattaattgtgctggtttcatcaaaattgatacttca
tcggtacgtgatttagatgcagatgatgtagatttactggattctactagagtgcatcct
gaaagttatgatttagcgaaaaaaatggctgtcgatgctctggaatatgatgatactgag
gaatgtgatccaacagttgcgttggaagagatagtacacagccctgcacgtttacgtgaa
cttgatttagatgctttcgcagaagaattaaaacgacaagaacatggagataaacatatc
accttgtatgatattcgaaaagaattgaataatcgttatcgagactatcgagaagcatat
caatctgctaatccagaaagtattttcagtatggtcacacatgagacacctgaaacttta
catgttggtcgtttagttgaatgtcgtgtgttatctgttgctactagacgaccacggcct
gaacaattagacaatgcaaatccaactaaaaacgaaattaatggtttatggatgtgccca
ttttgtcaacaagataacttccaactactcaatcacgtttggagtcattttgataataat
gaatgtcctgggcaaccagttggattaagagttcaattagacaatggaattgatggattt
ataccattaaagtttatggattccccagataaattatttgaacgaactcaaccgggttct
cttgtacaatgtcgggtaactaaaatcgacataacaagatttaatgtggagctcacttgc
aagtcagcggaattgaaggatgaacgtcatatatggcgtccacgtcaagatgctttttat
gattttgaaaaagaagaaaaagatctacgttctgaagcggaggcaatggctaaagctaag
gctaaaactaatccatacatgtctcgtttgatatttcatccatattttaaaaatattagc
tatgatcagttggctgcaatggagccggaattagagcctggtgcaattattattcgtcca
agtagaaagggaacggatcatctgactgtaagctggaagatagatgacggaattatgcaa
catattgatgtttccgaaaaggaaaaatcgaatagtttttcactgggaaaacttttaatt
attggtgatgaagaatttgaagacttagatgaaattgtggcacgtcatgtgcaacccatg
gcgtctcttgttcgtgatgtaatgacctacaaatattaccgtgattcttcgggtggtgat
cgtgctcacctaaatgctttacttcaacatgaaaagagccttaatccggatcgcattcct
tattttttgagttcaacaaaagaacgtcccggttatttcattcttgcgtatttacccaat
aagaatccacattttgaattatttagcacacgacccgaaggtttcaagtttcgccagtta
atattcccaactctcgaccgaatgattacttggttcaaagaacactataatgacgctgta
aattactatcgcggttaa
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integrated database retrieval system
