Schistosoma haematobium (urinary blood fluke): MS3_00006414
Help
Entry
MS3_00006414 CDS
T05004
Symbol
DDX6_1
Name
(RefSeq) putative ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MS3_00006414 (DDX6_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shx03019
]
MS3_00006414 (DDX6_1)
03036 Chromosome and associated proteins [BR:
shx03036
]
MS3_00006414 (DDX6_1)
Enzymes [BR:
shx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MS3_00006414 (DDX6_1)
Messenger RNA biogenesis [BR:
shx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
MS3_00006414 (DDX6_1)
mRNA degradation factors
5'-3' decay
Decapping complex
MS3_00006414 (DDX6_1)
Chromosome and associated proteins [BR:
shx03036
]
Eukaryotic type
Gene silencing
piRNA pathway
MS3_00006414 (DDX6_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
24596287
NCBI-ProteinID:
XP_051067741
UniProt:
A0A922LHU1
LinkDB
All DBs
Position
2:complement(20167895..20174063)
Genome browser
AA seq
483 aa
AA seq
DB search
MNSDLYLYIRRRSAIGKSNLRDYLSGCKDFLPLLMSALALKGSDSTANDDWKSTLKLPEK
DMRIKTADVTALKGSSFEDFCLKRDILKGIYEKGWESPSPIQESSIPIALTHRDIMARAK
NGTGKTGAYSVPVLESIDTTINKIQAIILVPTRELALQTSQICIELAKHTAIKIMLVIGG
TLLKDDLIRLSQTVHVLIGTPGRLVDLLSRGLIDISRCKIVVLDEADKLLSEELISGVEE
ILNGVDKSRQVLVYSATYPVTVQSFMTQHLRNPYQINLMETLTLKGITEYYAYVQEKHKV
HCLNTLFSKLQISQSIIFCSSAQRVELLAKKITQLGYSCYYIHARMSQQDRNRVFHDFRN
GCCRNLVCTDLLTRGIDIPTVNVVINFDFPKYSETYLHRIGRSGRFGHLGIAINLVTYAD
RYSLKTVETELVTEIKPIPKEIDKRLYVAEYQNENNLDPMTREALFNGRGLPSGNKEEVV
NNH
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaattcggacttgtatctgtacatccggcgccgttctgctattggaaaatctaatctt
cgggattatttgtcaggctgcaaagactttttaccattactgatgtctgcattggcattg
aaaggcagtgacagtactgcaaacgatgactggaagtcaactcttaagcttccggagaag
gacatgcgtattaaaacggctgatgtaactgctctgaaaggaagcagctttgaagacttt
tgtctaaagagagatatactgaagggaatatacgagaaaggttgggagtccccatccccg
atccaagaatccagtataccaatagctctaacgcacagagatataatggcaagagccaaa
aatggcactggcaaaactggagcttattcagtccctgtcctagaatcgatcgatactaca
atcaacaaaattcaggctattattttggtacccactcgagaacttgcacttcagaccagc
caaatctgcatagaacttgccaagcatacggctattaaaatcatgctggtaatcggtggc
acactgctaaaagatgatttgataagactaagtcaaaccgtccatgttttaatcggcacg
cctggtcgtttggtagatttactaagcagaggactcattgacatatccaggtgtaaaatt
gttgttctggatgaagcagacaaactactgtccgaagagctcataagtggggttgaagag
attctcaatggtgtggataaaagtcgtcaagttcttgtttattcagcaacgtaccccgtt
acagtccagtcatttatgactcagcatttgcgcaatccctatcaaataaatttaatggag
acattaacgctaaaaggaattactgaatattatgcatatgtccaagaaaagcataaggta
cactgcttaaatacgttgttttcaaagctgcagatcagccagtccataattttctgtagt
tcagcacaacgagtcgaacttcttgccaaaaaaatcacccagttgggatattcctgttat
tatatacatgcaaggatgtctcagcaggaccgtaacagagtctttcatgattttcggaat
ggttgctgccgcaaccttgtttgtacagaccttttgactcgtgggattgacattccgact
gtgaatgttgttataaattttgacttcccaaaatattctgaaacatatttgcatcgcatt
ggtagatctggtcgttttggtcatttgggtattgctataaacttggttacgtatgcagat
agatattcattaaaaacagtggaaacagaactagttactgaaatcaaaccaattcctaaa
gaaatcgacaagcggttatatgttgcggaataccaaaatgaaaataatttggatccaatg
acaagagaggcactgtttaatggtcgtgggttgccttcaggcaacaaagaagaggttgta
aacaatcattaa
DBGET
integrated database retrieval system
