Schistosoma haematobium (urinary blood fluke): MS3_00006879
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Entry
MS3_00006879 CDS
T05004
Symbol
PRPF8_1
Name
(RefSeq) Pre-mRNA-processing-splicing factor 8, variant 2
KO
K12856
pre-mRNA-processing factor 8
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MS3_00006879 (PRPF8_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shx03041
]
MS3_00006879 (PRPF8_1)
Spliceosome [BR:
shx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
MS3_00006879 (PRPF8_1)
Complex C
U5 SnRNP specific factors
MS3_00006879 (PRPF8_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
RRM_4
PROCT
JAB
Motif
Other DBs
NCBI-GeneID:
24590398
NCBI-ProteinID:
XP_035586874
UniProt:
A0A6A5D9U2
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All DBs
Position
1:<28787110..28806003
Genome browser
AA seq
2306 aa
AA seq
DB search
MLPSAKAREWQQLQSKKFSEKRKFGFVETQKDEMPPEHVRKIIRDHGDMTNRKFRHDKRV
YLGALKYMPHAVLKLLENMPMPWEQIRDVKVLYHITGAITFVNEIPWVVEPIYAAQWGSM
WIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEPIQLELDPEEDATIIEWF
YERNPLVESKYVNGITYRRWNLPLNIMSNLYRLANSLLTDLVDDNYFYLFDLKSFFTAKA
LNVALPGGPKFEPLVKDKTLEDEDWNEFNDINKIIIRQPIRTEYRIAFPYLYNSYPFQVH
LSWYHTPNVLFIKTEDPDLPAFYFDPLINPISQRQGVKAPELQPDDDETYELPEGFQPFL
AETPLYSDNTANGIALLWAPRPFCLRSGSTRRAIDIPLVKAWYREHCPSGMPVKVRVSYQ
KLLKYFVLNALHHRRPKPQKKRYLFRSFKATKFFQITSLDWVEVGLQVCRQGYNMLNLLI
HRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIVDSHVQYRLGN
VDAFQLADGLQYIFSHVGQLTGMYRYKYKLMRQIRMCKDLKHVIYYRFNTGPVGKGPGVG
FWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHYDLELRAA
VMHDILDMMPEGIKQNKARTILQHLGEAWRCWKANIPWKVPNMPIPIENMILRYVKAKAD
WWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYVTAEEAVA
IYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLRESYSVKNRLNQSQREELGLIE
QAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWY
EADKRRLFPPWIKPADLEPPPLLVYKWCQGINNLKDVWETGEGECNVLLETKFEKVYEKI
DLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFSSFITQYYGLVL
DLLVLGLERAAEMCGPPQMPNDFLQFQDTATEISHPIRLYCRYVDRFWMFFRFSAEDARD
LIQRYLTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLPRSVTTI
DWDSSFVSVYSKDNPNLLFAMCGFECRILPSCRSPGQAADANLPSGVWHLQNEVTKERTA
QCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYYREAAVSTVALLD
LLVKCENKIQTRIKIGLNSKMPARFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQT
DVGITHFRSGMSHDEDQVIPNLFSYILSWETEFRDSQSVWAEYALKRQEANAQNRRLTLE
DLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKQYQVLKQNPFWWTHQRHDGKLWN
LNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGL
NQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIH
ESVVMDICQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWPVSRPSLLA
DSKDLMDGTTTQKFWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVMIAID
LAYNLHSAYGNWFPGCKPLIQQAMVKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQ
NYNELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSV
WAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKG
SELQLPFQACLKVEKFGDLILKASEPQMVLFNLYDDWLKSISSYTAFSRLILILRALHVN
NDKAKIVLKPDKTTITEPHHIWPSLSSDDWIKVEYQLKDLILADYGKKNNVNVASLTQSE
IRDIILGMEISAPSQQRQQIAEIEKQAKEQSQLTATTTRTVNKHGDEIISTTTSNYETLH
FSSKTEWRVRAISATNLYLRTNNIYVSSDDIKENGYTYILPKNILKKFITISDLRTQIAG
YLYGISPADNSQIKEIRCIVMPPQWGTHQTVHLPNGLPQDEYLKEMEPLGWIHTQPNELP
QLSPQDITTHAKIFSDQDGEKTIVITCSFTPGSVSLCAHKLTPGGYEWGRQNTDKGNNPK
GYMPSHYERVQMLLSDRFLGFFMVPPQTSWNYNFMGVRHDPNMKYELQPLKPKKFYHRIH
RPSHFLNFTSIEENELTLTDRDNPLA
NT seq
6921 nt
NT seq
+upstream
nt +downstream
nt
atgttaccatcagctaaagccagagaatggcaacaacttcagtcgaagaagttctcggaa
aaacgcaaattcggcttcgtcgaaactcaaaaagatgaaatgccaccagagcatgttcgt
aagatcatcagagaccacggcgacatgaccaatagaaagtttaggcatgacaagcgtgtg
tatctcggtgcattgaagtatatgccacatgcagtgttgaagttgctagaaaatatgcct
atgccctgggaacaaatcagagatgtcaaggtactgtaccatatcaccggggccattaca
tttgttaacgaaataccttgggttgttgaaccaatctatgctgctcagtggggtagtatg
tggatcatgatgcgtcgtgaaaaaagggatcgtcgtcatttcaaacgcatgagattccca
cctttcgatgacgaagagcctccacttgattatgccgataacatacttgatgtagaacct
ctagagccaatacaattggagttagatccggaagaagatgctaccattattgaatggttt
tacgaaagaaatcccctggtagaatcaaagtatgtcaacggcatcacttaccgacgttgg
aatctacctctgaacataatgtccaacctttatcgtctggccaactctttgttgactgac
cttgtcgatgacaattacttttatttgtttgacctcaagtcattctttacggctaaggct
ctgaacgtcgctcttcctggaggtccgaagtttgaacccttggtcaaagacaaaacttta
gaggatgaagattggaatgaatttaatgatatcaacaagatcatcattcgtcaacctatt
cgtactgaatatcgaatagcgttcccctatctttataatagttatccatttcaagtgcat
ttatcatggtatcacactcctaatgtacttttcattaaaaccgaagatcctgatctccca
gctttttactttgatcctctaattaaccccatatctcagagacaaggtgtaaaggctccc
gagttacaaccagatgacgatgaaacgtatgaacttcctgaagggttccagccgtttctt
gccgaaactcctctgtacagtgacaacacagctaacggcatcgctcttttgtgggctcca
aggccattttgcttaagatcagggtctacaagacgggctattgatattcctttagtcaaa
gcttggtacagagagcattgtccttctggtatgcctgtgaaagttcgtgtttcttaccaa
aagctgctgaagtattttgttcttaatgccctacatcatcgtcgaccaaagcctcagaag
aaacgttacttgtttcgttccttcaaagctactaagttcttccaaattactagtttggat
tgggtagaggttggactacaagtgtgccgtcaaggatacaacatgcttaaccttcttatt
catcgaaaaaatcttaattatttgcatttggactataacttcaacttgaaaccagtaaaa
accttaactaccaaagaaagaaagaaatcacggttcggcaatgcttttcatctttgtcgg
gagatacttcgtttaacgaaactcatcgtagatagccatgttcagtatcgcttgggaaat
gtcgatgctttccagttggcagatggtctccaatacattttctcacacgttggacagtta
actggaatgtaccgttataaatacaaactcatgcgtcaaattcggatgtgcaaggattta
aaacacgtaatttactaccgtttcaacactggaccggtgggtaaaggtccgggtgtcggg
ttctgggcaccgggatggagagtatggttgtttttcatgcgcggtataaccccattactg
gagcgttggttggggaatctcttatcacgccaatttgagggaagacattccaaaggtgtt
gccaaaactgtcaccaaacaacgagttgagtctcattatgacttggaactgcgcgccgcc
gttatgcatgacatactggatatgatgcccgaaggtatcaaacaaaacaaagctaggact
attctacaacatttaggcgaagcatggcgttgttggaaagctaacatcccatggaaagta
ccaaatatgccaatccctattgaaaatatgattttacgttacgttaaagccaaagctgac
tggtggaccaatacagctcattacaatcgggaacgcattcggcgaggtgcaactgttgat
aaaactgtttgtaaaaagaatctgggtcgcttaactcgactgtatcttaaagcggaacag
gagcgacaacataattatcttaaggatggtccctacgtaactgcagaggaggctgtcgcc
atctacacaacaactgtacattggttagaaagtaggcgtttttcaccaattcctttccca
cctctaagttacaagcatgatacgaagttgttgattctcgcacttgaacgtctccgagaa
tcttacagtgtcaaaaacaggttaaatcaatctcaacgagaggaacttggtttgattgag
caagcttatgataatccacacgaagccctaagtcgcataaagcgacatttacttactcaa
agggctttcaaagaagttggaattgaattcatggatctttacagtcatttagtgcctgtc
tatgatgttgagcccttggagaagataacagatgcttatttggatcagtatttgtggtat
gaagccgataaacgtcgcctgtttcctccatggatcaaaccagctgacttggagcctcca
cctttacttgtgtacaagtggtgccagggtattaacaacctaaaagatgtttgggagact
ggtgagggtgaatgtaacgttttgttggaaacgaaatttgaaaaagtttatgagaaaatt
gaccttacattgctcaatcgtctcctgagattaattgtcgatcacaatattgcggactat
atgactgctaaaaataacgttgttataaattacaaagatatgaatcatacaaacagttac
ggaatcatccgcggtctgcagttttcatcatttattacgcagtattatggccttgtactg
gacttgctagttttgggtctcgagagagcagctgagatgtgcggccctccgcaaatgcca
aatgactttcttcagttccaggatactgccacagaaatctctcatcctatccgactgtat
tgtcggtatgttgaccgtttttggatgttcttccgtttctcagcggaggacgctcgcgat
ctcattcagcgttacctaacagagcaccctgatccaaataacgaaaatattgtgggttac
aacaataaaaagtgttggccacgtgatagtaggatgcgcttaatgaaacatgatgtcaat
cttggtcgtgctgttttttgggatatcaaaaaccgtttgccgagatctgttacaacgatt
gattgggatagcagtttcgtctccgtttacagcaaagataaccctaatttactgttcgca
atgtgtgggtttgaatgtcgcattctaccatcttgccgttcacctggtcaagctgcagat
gccaatcttccaagtggcgtatggcatctacaaaacgaggtaaccaaagagcgtactgca
caatgtttccttcgagtggatgatgaatcaatgcaacgattccataacagagtcagacaa
attttaatggcctccggatcgacaactttcaccaaaatagtgaacaaatggaatacggct
ttaattggtttaatgacttattatcgcgaggcagcagtaagcactgtcgcattattggat
ctgttggtgaaatgcgagaacaaaatacaaacacgtatcaaaattggattaaactcaaaa
atgcctgctcgtttccctccagtagtcttttacacaccgaaagaacttggtggtttaggt
atgctcagtatgggtcacgttcttattccacagtctgatttacgctggtcaaaacaaact
gacgttggtattactcactttcgttcaggcatgagtcatgatgaggaccaggttattcca
aatttgttctcttacatcttatcatgggagacggagtttcgcgattcccagagtgtttgg
gctgaatatgcgttaaaaagacaagaagcaaatgctcaaaatagacgtttaacgttggaa
gatctcgaagacagttgggatcgcggtattccccggattaatactctcttccaaaaagac
agacatacactggcttacgataaggggtggcgtgtacggactgagttcaaacaatatcaa
gttcttaagcaaaatccattttggtggacgcatcaaagacacgatggaaagttatggaat
ttgaacaactatcgtacggatatgatccaggctctaggtggtgttgaaggtattttggag
cacaccttgtttaaaggaacttatttccctacatgggaaggtcttttctgggagaaagcc
agtggttttgaagaatcaatgaagtacaagaagttgactaacgctcagcgatctgggttg
aatcaaatacctaatcgacgctttacattatggtggtctccaactatcaatcgcgctaat
gtctatgttggtttccaagtacaacttgatctaactggtatttttatgcacggcaaaatt
ccaactctgaagatctcactcatccagatattccgagctcacttgtggcaaaaaattcat
gaatctgtagttatggacatttgtcaggtgtttgatcaggaacttgacgctttggaaatt
gaaactgtccaaaaggaaacaatccatcctcgaaagtcgtataaaatgaattccagttgt
gcagatattcttttatttgcctcctacaagtggcctgtatctaggccaagtctgttggct
gactcaaaagaccttatggatggaactaccactcagaagttttggatcgatattcagctc
agatggggtgattatgattcccacgatattgagcgttacgccagagcaaaatttctggat
tataccactgataacatgtccatatacccttctccaactggtgttatgattgcgattgat
ctcgcttacaatctgcatagtgcatatggaaattggttccctggctgtaaaccactcata
caacaagctatggtaaaaataatgaaggccaatcctgctctatacgtgttacgtgaacgc
attcgtaaagcattacagttgtattctagcgaacctactgaaccttatttgagttcacaa
aactataacgaattgttttccaaccaaattatatggttcgttgatgatacaaatgtatat
cgcgtcactatacataaaactttcgaaggcaatcttacgactaaacctatcaatggtgct
atattcattttcaatcctcgcacagggcagcttttcttaaagataatccacacttcagtt
tgggcaggacaaaaacgtttaggtcagttggccaaatggaaaacagcagaagaagttgct
gcactcatccgttccttgccagttgaggaacaaccgaaacaaatcattgttactcgcaaa
ggaatgttggatcctttggaagtacatcttcttgatttccctaacattgttataaagggt
tccgagcttcaactgcctttccaagcgtgcctaaaagtcgagaagtttggagatctcata
ttaaaggcatcagagccacaaatggtcttattcaatttgtatgatgattggctcaaatct
attagctcttacacagcattttctcgtctgattttaattttacgagctttgcatgtcaat
aatgataaagctaaaattgtgcttaaaccggacaaaacaacaattactgaaccccatcat
atttggccatcccttagttcagatgattggatcaaagtagaatatcagctgaaagacctt
attttagctgactatggaaagaaaaacaatgttaatgtggcttccttaactcagtcggag
atacgagatattattttgggtatggagatttctgctccgtcacaacaacgtcagcaaata
gccgaaattgaaaaacaggccaaagaacaatcccagcttacggcaaccacaacaagaact
gtcaacaaacatggtgatgaaatcatctcaaccacaacatcaaactatgaaactctccat
ttcagcagtaagacggaatggcgcgttcgtgctatctcagcaacgaatttgtaccttcgg
acaaacaatatatatgtcagttcggatgatattaaagagaatggctacacatatatttta
cctaaaaatattttgaagaaatttataaccatatcagatttacgaactcaaattgcaggc
tacttatatggtatttcacctgctgataattcccaaattaaagaaatccgatgcattgta
atgccaccgcaatggggtactcatcaaactgttcatctacccaatggtctaccacaagat
gagtatttaaaagaaatggagccacttggttggattcacactcaaccaaatgaattaccg
cagttatcacctcaagatattactacccatgcaaagatcttctctgatcaagatggagaa
aagaccatcgtcataacatgcagcttcactcctggttcggtctcactttgtgcacataaa
ctgactcctggcggctatgaatggggtaggcaaaatactgacaaaggtaacaatccaaag
ggttatatgccaagccattatgaaagagtacaaatgttactatctgatagatttttgggt
ttctttatggtgccgcctcagacatcatggaactacaactttatgggtgtacgtcatgat
cctaatatgaagtacgaactacaacctctcaaaccgaagaaattttatcatcgtatccat
agaccttcacactttttgaactttacatctattgaagagaatgaactaactttaactgac
agagataaccccttggcataa
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integrated database retrieval system
