Schistosoma haematobium (urinary blood fluke): MS3_00007015
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Entry
MS3_00007015 CDS
T05004
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MS3_00007015 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shx03032
]
MS3_00007015 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
shx03400
]
MS3_00007015 (TOPBP1)
DNA replication proteins [BR:
shx03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
MS3_00007015 (TOPBP1)
DNA repair and recombination proteins [BR:
shx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
MS3_00007015 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
BRCT_TopB1_SLF1
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
24589565
NCBI-ProteinID:
XP_012793435
UniProt:
A0A095AI88
LinkDB
All DBs
Position
2:complement(42737946..42759014)
Genome browser
AA seq
1390 aa
AA seq
DB search
MDEIIFINEPPSSLLNAAFNAVSEYENICPKRLSSSEVIKLYPLKPSRDVCFVLARFDGE
CYDHLRSLGVSIYGPQVILHYVRENKPLPNLPYPLFSTALLNATATVTSVTGAQRKQIFD
SIQMLHGSVSRDLTDNVNVIVTAKVGSKKYLVGASRNLHILLPDWITEAWRLSEIQDPID
MMLGIYTEKYRVPIFSQLVICVSGLSVEERKEVSDLVSKHGGKYSGVMKIGETTHLVTRQ
ASGTKYVHAKKWKIQIISIKWLIDSVDKGYALDEEDYRVDQVKTKSSTPTPNTQQNEISF
DNISAISYVGAASKVDETRSVCFRESAQVVQSGSSILSGCSIRFSDCKKDEVHLYSSIVR
ELGGKLCTELFDQVTEMLTHVVVGSTPSSNGMSREKGVKYVKGAWLLACRDSKVRIPEDE
YLIPEINENLQRLEDEVDVTSTNIDAADFQLINQYFTGGLADDEFQDEATETKEAIQDFA
KTTIRPEIADEVKHPEVSEISYPGGCFSNLIFSFHKELSDADVVKYTDIIKTAGGCISDN
ERNVNFLVAPFFVINLPPISSCEFVTIGWISYCIHEKSLCLQEIRKEYAFKPVLHKPGPP
PLSGCVISLSGFVGNDRSLLTSYAQALGAVVQECFLRKSVASRNLAASTHLIAAKPDGRK
WPAAQQWGLPAVNRLWLYKCAETWSLVNECEFPVYDTSKDSKISNNEDLTVSSKEVKISE
CGMLKNISSCRKSASGKTTENSEYNLALSNLAETMQTPDWLQDFREGRLSKLNSSLHSSS
YSYKPSPTFSVQVSRCLKNAVQETSALPKRKLELSDPGEEEDSLCLRGVVICVAKHLSSR
QVELNEIVKKLGGDFKWTYNPEVCTHMISETSLDDALPPSTPSSVPVTPSTCPERQIVYA
DVAAAKQDGKYLVNPKWLTSCMVACYRLPESDFPPKCVDGKTSVSTSPVEPQPKVARVAS
LNLFGDVNRRLEMMITGNKTNCFRNGFKNNFKENMDPTTETDGNHQQFLNEEGQNLVNGE
FIDPPFPSVPTGQRRLRRNPRRSNYSTNNHSNTTITSHESKVDSDNGNDRSNVGNPNNPN
NNIDLVQPGQMITVRWKYEDDTLHQTTTTTSTGLVISKANCEKNQSENKIEQTLRENITQ
KSDNQSSFKSPIQKQQPQPDCLSPKPNYVISFTGLSLDERDHYAEIVERLGGEVDNLTTL
SERTTHLIVYAPTRSEKCLICLASGKWMLHKSYLDACSRESCWVDEAAYEWGGPGTEPLL
MQLSPFPCPPGGPNILHQQKTAQIRDLARSARRWRLSGGKAFHNWKVIFGPGCDKESSFR
RIIEAGGGKVLSSNPPYPPPHEVTHAFFKTGGNSTSALSNLPRNYSWLRIDYLCSYLSSG
QEISKSEFAL
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggacgagattatttttatcaatgaacctcccagttcactattaaacgctgcatttaat
gctgtttccgaatacgaaaatatttgtccgaaacgtctaagttcttccgaagtcattaag
ctatatccattgaagccatctagagacgtttgttttgtgcttgcccgctttgatggtgag
tgttacgaccatcttcggtcactcggagtatcaatttatgggccacaagtcattcttcat
tacgtaagagagaacaagccgttaccaaatcttccatatcccctgttttcgacggctctc
cttaatgccactgccacagttacatctgtaactggagcccagaggaagcaaatattcgat
tcaatacaaatgttgcacggttctgtgtcacgagacttaacagataacgtgaatgtcata
gttacagctaaagttggttccaaaaaatacttggtgggtgctagcagaaatctccatatc
ttacttcctgactggattaccgaagcctggcgtctttcagagattcaagatcctatagat
atgatgttagggatttacactgagaagtatcgcgtcccaatcttttctcagcttgttatt
tgtgtttctggtctgtctgtagaggaacgcaaagaggtatctgatttagtctccaagcat
ggggggaagtactcaggtgtaatgaaaataggtgaaacgacgcatttagtaactcggcaa
gcatcaggaacaaagtatgttcatgctaagaagtggaagatacagataataagtatcaag
tggcttattgactcagtagataaaggatatgctcttgatgaggaggattatcgagtagac
caagttaagacgaaatcttcgacgccaactccaaacacacagcaaaatgaaatctccttc
gacaatatatcagcgattagttatgttggtgctgcttctaaggttgatgaaactcgtagt
gtatgtttcagagagagtgctcaagttgttcaaagtggtagttctatcctttctggttgt
tcaattagattctctgattgcaaaaaagatgaggttcatttgtactcgtcaattgttaga
gagttaggtggcaaattatgcacagaattgtttgatcaagttacagaaatgctaactcac
gttgttgttggaagtactcctagctccaatggtatgtcgagagaaaaaggtgttaaatac
gtcaagggagcttggctacttgcatgtcgggattcgaaagttcgtattccggaggacgaa
tatctcattcccgaaataaacgaaaaccttcaaaggcttgaggatgaagttgacgttact
tcaacaaacattgatgcagctgacttccagttaattaatcagtattttacaggtggtcta
gcagatgatgaatttcaggatgaagctactgaaacaaaagaggctatccaagattttgct
aaaactacaatcagacctgaaatcgctgacgaggttaagcatccagaggtttctgaaata
tcttatcctggtggatgcttttcaaacctcatattctcttttcataaagaattaagtgat
gcagatgttgtcaaatacactgacataattaaaacagctggaggttgtatctctgacaat
gaacggaatgtgaatttcttagttgctccatttttcgtcatcaaccttcctcctattagt
tcttgtgaattcgttactattgggtggatttcgtattgtattcatgaaaagagtctttgt
ttgcaggaaatcagaaaagaatatgcatttaaacccgtgttacataaaccaggcccacca
ccgttatctggttgcgtcatttcactaagcggtttcgtaggcaatgataggagtttatta
acctcatatgctcaagctctaggagctgtcgtccaggaatgcttcttgcgtaagtcagta
gcatctaggaatctcgctgccagtactcatctgattgcggctaaaccagatgggcggaag
tggcctgctgctcagcaatggggtcttccggctgtcaatcgtctttggctttataaatgc
gccgagacttggagtttagttaatgaatgcgaattcccagtatacgatacaagtaaggac
tctaaaatcagtaataacgaagatttaactgtaagttccaaagaggtaaagatcagcgag
tgtggcatgttaaaaaatatttctagttgtcgtaaatcagctagtggtaaaactactgag
aattccgaatataacctggcacttagtaatctagcagaaacaatgcaaacccctgactgg
cttcaagattttcgcgaaggtcgtttatcaaaattaaattcgtcacttcattcttcaagt
tattcgtacaagccgtctccaactttttctgtacaagtgtccagatgcctgaaaaatgca
gtccaagaaacatcggcgctacccaaaagaaagttggaactttcagatccaggtgaagaa
gaggatagcttatgcttacgaggagtggtaatatgtgtagcgaaacacttaagttctcgc
caagtggagctaaatgaaattgtgaaaaaactgggtggagatttcaagtggacttacaat
cctgaagtttgtacacatatgatctctgaaacttcacttgatgacgctttacccccatca
acaccatccagtgtaccagttacacctagtacctgtccagaacgccaaattgtttatgcc
gatgtagctgctgccaagcaagatgggaaatatctggtcaatccaaaatggttaacttct
tgtatggtagcctgttatagactacctgagagtgatttccctcctaaatgtgtggatggg
aaaacatctgttagcacatctccagtagaaccacaaccaaaagtagcacgagtcgcctct
ttaaatcttttcggagatgttaatcgtcgattggaaatgatgattactgggaataaaact
aactgctttcggaatggatttaaaaataatttcaaggaaaatatggatccgactaccgaa
accgacggtaatcatcaacagtttttaaatgaggaaggccaaaatttggtgaatggggag
tttatagatcctccatttccgtcagttcctacgggtcagagacgtcttagacgaaatcct
cgtcgcagcaattactcaactaataatcattcaaataccactataacttctcatgagtcc
aaagtggacagcgataatggtaatgatagatcaaacgtagggaatccaaacaatccaaat
aataatatcgatttggtacaacctggccaaatgatcacggttcggtggaagtacgaagat
gacactctacatcagacaacaacaacaactagtactggtcttgtaatttcaaaagcaaac
tgcgaaaagaatcagtctgaaaataaaattgaacagacattaagagagaatattacacaa
aaatcagataatcaatcatcgttcaaatcaccaatacaaaaacagcaaccacaacctgat
tgcctatcacctaaaccaaactatgtaatctctttcactggcctgtcattagacgaacga
gatcattatgcagaaattgtggagcgattaggtggagaagtagataatctgactacatta
agcgagagaactacacatctaattgtgtatgcaccaacacgaagcgaaaaatgccttatc
tgtcttgcttctggcaagtggatgttgcacaaatcctacttagatgcatgctcacgggaa
tcctgttgggttgatgaagcagcatatgaatggggtggtcctggtactgagcctttattg
atgcagttaagcccgtttccttgtcctcccggtggtcctaatatattacatcaacagaaa
actgctcaaattagagatctagctagatctgcacgtcgttggcggttgtctggaggcaaa
gcatttcataattggaaggtcatctttggacctggttgcgataaagaaagtagttttaga
cgtattatcgaagctggcggaggaaaagtattatcaagcaatccaccttatcctcctcct
catgaagttactcatgcattttttaaaacaggtggtaattctaccagtgcactttccaat
ttaccgcgtaactattcatggttgcgtatagattatctttgttcctatttaagttctggt
caagaaatctcaaaatcagaatttgctctttaa
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