Schistosoma haematobium (urinary blood fluke): MS3_00007033
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Entry
MS3_00007033 CDS
T05004
Symbol
ERCC2_1
Name
(RefSeq) General transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03022
Basal transcription factors
shx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MS3_00007033 (ERCC2_1)
09124 Replication and repair
03420 Nucleotide excision repair
MS3_00007033 (ERCC2_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shx03021
]
MS3_00007033 (ERCC2_1)
03036 Chromosome and associated proteins [BR:
shx03036
]
MS3_00007033 (ERCC2_1)
03400 DNA repair and recombination proteins [BR:
shx03400
]
MS3_00007033 (ERCC2_1)
Enzymes [BR:
shx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MS3_00007033 (ERCC2_1)
Transcription machinery [BR:
shx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MS3_00007033 (ERCC2_1)
Chromosome and associated proteins [BR:
shx03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MS3_00007033 (ERCC2_1)
DNA repair and recombination proteins [BR:
shx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MS3_00007033 (ERCC2_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DUF5438
Motif
Other DBs
NCBI-GeneID:
24591853
NCBI-ProteinID:
XP_051068497
UniProt:
A0A922LIG5
LinkDB
All DBs
Position
2:complement(43463859..43516631)
Genome browser
AA seq
785 aa
AA seq
DB search
MKINIDGLLVYFPYEYIYPEQYHYMIELKRTIDAKGHGVLEMPSGTGKTVSLLSLIVAYM
KARPGIVEKFIYCSRTVPELEKVIDELKVLDKYYATETNEKGCGLLGIVLSSRKNLCIQR
DVKQAGDGAAVDSACFRLTASFVRKKHMTDPNVPYCKYYEEFDLHGRDNPLPTGIYGMAD
IKTYAKKHNYCPYFLTRYAISYANIVVYSYFYLLDPKIANIVSRELPKNSVVVFDEAHNI
DNVCIESMSCLITRRSLEKCTTSLNLLTQTVNEAKINNSERLKEEYQRLVEGLRQAKLSK
ETDLVLANPALPDDILQESVPGSLRSADSFLSFLRRFLEYVKLRLRIAHVVHETPVAFLR
DCLEKVCVDRKPLQFCAERLRSLLHTLELADYANFSSLTLLCNFATLVSTYTRGFCLIIE
PFDERTPTIINPVLYFHCMDASLPIRPIMSRFTSVIITSGTLSPLEMYPRILDFHPVNTV
SFTMTLARNCVLPMIVSKGNDQVPMTTKFESRQDVAVIRNYGHLLAQLSAVVPDGIVAFF
PSYHYLESTFTSWYEQHIVEQIQRNKLLFVETQDAEETSLALAAYHRACENGRGAVLLSV
VRGRVSEGIDFDHHLGRCVIMFGVPYVYTQSRIFKARLDFLREQYNVRPNEFITFDAMRH
AAQCLGRAIRGKSDYGIMILADKRYARADKRFKLPGWIQSQLQDAFINLSIEESIQASRR
FLRLMGQPFNKDDQLGLALLTREHINKLIIQNQTNSVISMNKMNNIQTMNNSNQPRTVTT
AIPLK
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaagataaatattgatggactactggtctatttcccatatgagtacatctatccagag
caatatcattatatgattgagttaaagcgtaccatagatgctaaaggtcatggtgtttta
gaaatgccatctgggactggcaaaacagtttcactactctcattaattgttgcatatatg
aaagctcgtcctggaatagttgaaaaattcatttattgttcacgtacagtacctgaatta
gaaaaagtcattgatgaattaaaagttcttgataaatattatgcaacggaaactaatgaa
aaaggatgtggtctattgggaattgtccttagttcacgcaaaaatctatgcattcaacgt
gatgtaaaacaggctggtgatggagctgctgttgattctgcttgttttcgattaactgct
agctttgtacgtaaaaaacatatgactgacccgaatgttccctactgtaaatactatgag
gaattcgatcttcacggtcgagataatccgttacccactggcatctacggtatggctgat
atcaaaacatatgccaaaaagcataactattgtccttacttccttacacgatatgctatt
tcctatgcgaatatagtcgtctacagctacttttatcttcttgatccgaaaatagctaat
attgtctcacgagaattaccaaagaattcagttgttgttttcgatgaagcgcataacatt
gacaatgtttgtattgagtcaatgagttgtttaattacaagacgttctttagaaaaatgt
acaactagtttaaatctattaacacaaactgttaatgaagccaagataaacaattcggaa
cgtttaaaagaagaatatcaacgtcttgttgaaggtttaagacaagcaaagttatcaaaa
gagacagatttggtattagctaacccagctttaccagacgatatacttcaagaatcagta
ccaggatcacttcgaagtgcagacagtttcttgtcgtttctccgtcgatttttagaatat
gtaaaattacgtttacgtatagcccatgtggttcatgaaactccagtagcattcttacgt
gattgtttagaaaaagtttgtgttgatcgtaaaccactacaattctgcgcggaaagatta
cgttccctgcttcatactttagaattggcagattatgccaatttttctagtttaactttg
ttatgtaattttgcaacacttgtatctacatacactcgaggtttttgtctaatcattgaa
ccatttgatgaacgtacaccaactatcatcaatccagtgttatattttcattgtatggat
gccagcttacctatacgaccaattatgtcacgatttaccagtgtaattattacttccggt
acactttcaccgctggaaatgtatccacgtatattagattttcatcctgtcaatacagta
tcttttaccatgacattagctcgtaactgtgttcttccaatgattgtatccaaaggtaat
gatcaagtcccaatgacaacaaaatttgaaagtcgacaagatgttgccgtaatacgtaat
tatggtcatttattagcacaattatctgcagttgtcccagatggtattgtggcatttttt
ccaagttatcattatcttgagtcaacatttaccagttggtatgaacaacatattgttgaa
caaattcaaaggaataaattgttatttgttgaaacacaagatgctgaagagacaagttta
gcattggctgcttatcatcgggcatgtgaaaatggacgtggagctgtattattatcagtt
gtacgtggtcgagtatctgaaggtatagattttgatcatcatcttggtcgttgtgttatc
atgttcggtgtaccgtatgtgtatacacagagtcgaatattcaaggctcgtttagatttc
cttcgtgaacaatacaatgttcgaccaaatgaatttattacattcgatgcaatgcgtcat
gctgcacaatgtttaggacgagctattcgtggtaaatccgattatggtattatgatttta
gcggataaacgttatgctcgcgcagataaacgttttaaattacccggttggatacaatcc
caattacaagatgcatttattaatttatctatagaagaatcaatacaagcatcaagacgt
tttttacgtttaatgggtcaaccatttaataaagatgatcaattaggtttagcattatta
acacgtgaacatattaataaattaattatacaaaatcaaactaattcagtcatttcaatg
aataaaatgaataatatacaaacaatgaataattcaaatcaaccaagaactgtaaccaca
gcgataccattgaaatga
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