KEGG   Schistosoma haematobium (urinary blood fluke): MS3_00007295
Entry
MS3_00007295      CDS       T05004                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
shx  Schistosoma haematobium (urinary blood fluke)
Pathway
shx03420  Nucleotide excision repair
shx04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:shx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    MS3_00007295 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    MS3_00007295 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:shx04121]
    MS3_00007295 (DDB1)
   03400 DNA repair and recombination proteins [BR:shx03400]
    MS3_00007295 (DDB1)
Ubiquitin system [BR:shx04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     MS3_00007295 (DDB1)
DNA repair and recombination proteins [BR:shx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      MS3_00007295 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      MS3_00007295 (DDB1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st
Other DBs
NCBI-GeneID: 24594024
NCBI-ProteinID: XP_051066083
LinkDB
Position
4:7473087..7493499
AA seq 1339 aa
MAHFYHVTTQRPTAVVKTCTGHFTSPNDLNLLICKNTYVEVFEVTCEGLKLIRDVPINAK
IVAASLFRRKDRETDSLFLLTHKAGVAIIECVRSNDSVEFVTVASGSVEDRSARIIDQGF
DVLIDPGANYIVVRLYHGLLKIILLQCIGEKIGTDFLDTNQWTVNTYSVRIEEGNIVDMA
FIYGYSLPTFAMIYEDELVLHMKTYEIYGREPVLRNVQLTLDSIEPDSKLLIPVPKPYGG
VILVGDNIICYHTKDGPHISQYIPQAKASQVLCYAAVDAQRYLLGDMAGRLYMVHLLSED
ISAAASNGTSTSDSLSAVRIGSIRIELLGETATPESIAYLDNGVVFIGSTLGDSQLIRLN
PDPDPERNSYITILETYTNIGPIVDMVLLETKGQNQLITCSGAYKEGSLRVIRNGIGIHE
HATIDQDLIKGAWCFPIESDRFDDTIVVSMVGQTQLLHLADDDITALHLEGFKTDEQTVY
CATLSPSSDSPKPECMMIDENNNTLDPLLLQATTSGLRLIGIQSLYGKGCLTEWKPPSGR
GISCLSSFRHTIVVASGTELYVLKVVGESNNPKFEQVSHRQMSHEVACIDLTPFNHDRAI
AAINAVSSNYIDSTSSSTLDKSVPSLVAVGLWLGHGLALLKLPNLELVHEEPLPETTAST
GTALLPRSVLIAQLEDMAYLFAAMGDGTLYFYTIDPSEDHVCLRDPKRVSAGTGPSMFLR
QWRSQRKVNVFVCSNHPCVIYSIKNKLIFANLNLKEVNFMTPLNGLFYSDCIALVTPTAL
IIGSVDEIQKLHVRTLPLEETPKRLALQSETSSLGVITYRQEMFQEGMGFKPVRSSISLS
QKIPKSASRLPKTAPSSVSATERKFREIEVSSLLIFNQSNLEIQFAHNFYFSQTLVEVAV
SIASVQSDIHNGPLFAVGTAFLVEDEVEPSKGRIHLFRWDPESSRLDTVLVHDVNGSVYR
IVDFNGRLLAAINSSVRLFDIKEDSLRLACSFNENIIVLFLRRKGDFVLVGDLMRSLTLL
LFKSNVNNFEAIGRHRHPRWTTCIEILDDEHFLAAEVENNLFVVSRDLPENTKEPSFRAL
LSSSSDSCVLPSLSSQLQSNNASSSKTTGSSTQPDNTTNDNIVASGTSSTTTSMSSIPSS
VAEGRSSSTQSTRHFLDSRLTGSKPNSSGVSGEMQRLVDCAYFHTGDFVNVFVRGNLVLQ
NAEERWAAVGYPGHLYGTVNGGLGLLVQVSPVLFAFLKEIEFRLSNLVVPVGGFSHDTWR
AFKADREIKMSHNFVDGDLIETVTDLNMDDKAKLVKGLRIPVNMNEFGTAGSTCTSDPET
RECTVEDLVKVVEEMSRLH
NT seq 4020 nt   +upstreamnt  +downstreamnt
atggcgcatttttaccacgtgactacccaacgtcctactgccgtggtaaaaacgtgtaca
ggccattttaccagcccaaatgatctgaacctactgatatgcaaaaacacatatgttgag
gtttttgaagttacatgtgaaggcttgaaattgattcgagatgtgcctattaatgccaaa
atcgttgccgctagtctttttagacgaaaagatcgtgaaacagattcgttatttttactc
actcacaaagctggtgtcgctatcattgaatgtgtgcgaagcaatgattcagttgagttt
gtcactgtcgcttctggaagtgtagaggatagaagtgcacgaataatcgaccagggtttc
gacgttctaatcgaccctggtgccaactatattgttgtacgactgtatcatgggctttta
aaaatcatattactccaatgtattggcgaaaaaataggcactgattttctagatacaaac
cagtggactgtaaatacatacagcgtgagaatcgaagaaggtaacattgttgatatggcc
ttcatatatggctatagtttaccaacatttgctatgatttatgaggatgagcttgtgttg
catatgaaaacatatgaaatatatggacgggagcccgtacttcgcaatgttcaactgacc
ctagattccatagaacctgattctaaacttcttattccagttccgaaaccctatggaggc
gttattttagtcggcgacaatattatatgttatcataccaaagatggaccccatatatct
cagtacattccacaagcaaaggctagccaagtactgtgttacgctgctgttgatgcacaa
cgttatttactgggtgatatggctgggcgcttatacatggtacatttactctccgaagat
atttctgcggccgctagcaatggtacaagtacctctgatagtctttcagcagttcgaatt
ggttctatccgaattgaacttcttggagaaactgcgacacctgaatctatagcctaccta
gacaatggagttgtatttattggctcaacacttggggactcacagttgattcgtttaaat
cctgacccagatcctgagcgtaatagttatataactattttagaaacatatacaaatatt
ggaccgatagttgacatggtcttattagaaacaaaaggtcagaatcaattgatcacttgt
tcaggagcttataaagaaggaagtttacgtgttatacgcaatggaattgggattcatgaa
catgctactattgatcaagatctaattaaaggtgcttggtgcttcccgattgaatctgat
cgtttcgatgatacaattgtagtatctatggttggtcagacccaacttcttcaccttgcg
gatgatgatattacagctctacacttggaaggttttaagactgatgaacaaactgtttat
tgtgctacactatcaccctctagtgattcacctaagccagaatgtatgatgattgacgag
aataataatacgttagatcctttactgttacaagcaacaacaagtggcttacgcctaatt
ggtattcaatcactttatggcaaaggttgtttaacagaatggaaaccaccatctggacgt
ggaatctcttgtcttagctcatttcgtcatactatcgttgtagcgagtgggacagaatta
tatgtgttaaaagtagttggagaatcgaataatccaaaatttgaacaagtttcacataga
caaatgtcccatgaagtggcttgtattgatctaactccctttaatcatgatcgtgcaatt
gcagctattaatgcagtgtcatcaaattatatagattcaacttcatcttctactcttgat
aaatctgtaccatctttagttgcagtcggtttatggttaggacatggtctcgctttactt
aaacttcctaatttagaacttgttcatgaagaacctttaccggagacaacagcatcaact
ggtacagctctattacctcgttctgtattgattgctcagttagaggatatggcttattta
tttgctgcaatgggtgatggtactctttacttctatacaattgatccttcagaagatcat
gtttgtttacgtgatcccaaacgtgtcagtgcaggcactggaccttcaatgtttctaaga
caatggcgttcacaacgtaaagtgaatgtatttgtttgctcaaatcatccttgtgtaata
tattcaattaaaaataaattaatatttgccaatttaaacttgaaagaagtgaattttatg
actccattaaatggattattttatagtgactgcattgcactggttactccgacggcactc
atcattggatcagtggatgaaattcaaaaactccacgtaagaactctgcctttagaggaa
acaccgaaacgccttgcattacagtcagaaaccagcagcttaggtgttattacatatcgt
caagaaatgtttcaagaaggtatgggattcaaacctgttcgttcatcgatatctttatca
cagaaaattcccaagtcagctagccgacttccaaagactgcaccatcttctgtctctgct
actgaacgaaagtttcgtgaaattgaagtttcatctctgctcatattcaatcaatctaat
ttggaaattcaatttgcacataatttctacttcagtcaaacattagttgaagtagctgtc
agtatagcttctgttcaatctgatattcataatggaccattgtttgctgtaggcactgct
ttcttagtagaagatgaagtggaaccatctaagggacgaattcatttattccgttgggat
cctgaatcttctagattggacacagttctagtgcatgatgtgaatggttctgtttatcga
atagtggattttaatggtcgtctactagctgctatcaatagttcagtacgactttttgat
attaaagaagattctttacgattagcatgtagtttcaatgagaatatcattgtacttttt
cttcgtcgcaaaggtgatttcgttcttgtcggtgacttgatgcgttcactaacattgtta
ctattcaaatcaaatgttaataattttgaagctattggacgacatcgtcatcctcgttgg
acaacatgtattgaaatccttgatgatgaacattttcttgctgcagaagtggaaaataat
ctttttgtcgtttcaagggatctaccagaaaatactaaagaaccaagttttcgtgcttta
ttatcatcatcgagtgactcatgtgttttaccatcattatccagtcaactacaatccaat
aatgcttcatcatcaaagaccaccggttcatcaactcaacctgacaataccactaatgat
aatattgttgcttctggcactagttctactacaacttcaatgagttcaataccatcatca
gtagcagagggtcgaagtagtagtacacaatcaactcgtcattttcttgattctcgtcta
actggcagtaaaccgaattccagtggtgtatcaggtgaaatgcaacgtctagttgattgt
gcttattttcatacaggagattttgtcaatgtatttgtacgtggtaatctcgtgcttcag
aatgctgaagaacgctgggctgctgttggttatcctggtcacctttacggtactgttaac
gggggtttaggtcttcttgttcaagtttctccagttttatttgcgtttttgaaagaaatc
gagtttcgtttgtcaaatctggttgtacctgtcggtggattttcacatgatacatggaga
gcttttaaagctgatcgtgaaattaagatgtcgcataatttcgtagatggtgatctcatt
gagacagttacagatttaaacatggacgacaaggctaaattagtcaaaggtttaagaata
ccggtgaacatgaatgaattcggaactgctggttcaacgtgtacttctgatcctgaaaca
cgagagtgtactgtggaagatttagtcaaagttgttgaagaaatgtcacgtcttcattag

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