Schistosoma haematobium (urinary blood fluke): MS3_00007823
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Entry
MS3_00007823 CDS
T05004
Symbol
BARD1_1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MS3_00007823 (BARD1_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shx03019
]
MS3_00007823 (BARD1_1)
04121 Ubiquitin system [BR:
shx04121
]
MS3_00007823 (BARD1_1)
03036 Chromosome and associated proteins [BR:
shx03036
]
MS3_00007823 (BARD1_1)
03400 DNA repair and recombination proteins [BR:
shx03400
]
MS3_00007823 (BARD1_1)
Messenger RNA biogenesis [BR:
shx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
MS3_00007823 (BARD1_1)
Ubiquitin system [BR:
shx04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
MS3_00007823 (BARD1_1)
Chromosome and associated proteins [BR:
shx03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
MS3_00007823 (BARD1_1)
DNA repair and recombination proteins [BR:
shx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
MS3_00007823 (BARD1_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
Ank_4
Ank_3
zf-RING_6
BRCT
Ank_5
zf-C3HC4
zf-RING_5
Ank_KRIT1
zf-RING_10
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
24597386
NCBI-ProteinID:
XP_035589945
UniProt:
A0A922LGD2
LinkDB
All DBs
Position
4:29935072..29951147
Genome browser
AA seq
878 aa
AA seq
DB search
MFILQMISLSQTHRAIIELLELMRCDNCASTLHQPFTTGVCEHLLCSSCIPSRGNVKAAS
CCPVCSVPVHARDFQVHPQFTSLVLVARRLKKLTMNTSQEKIKDSQNSVIENTIPDATKN
EIMLPQVVIKKAYSSRQQLSEDNDSKRPIGVSYKRGHSLVNSDTNISTADTFVSNVCSTG
NDSCINFKPHYPSKHDVKANKKQRLNKVKKLPAYSSSDIHQTLSVNSVNGNESCVSLDKP
IESLSVEAVVVHNTRNARNKIVSKVCKDKIEPKQTMPSKIDVPVPFASPEPSRLTDQSTL
SPSDPISFKTSVFLTPVDLPITNENKAATSKSSSISKKNSKKIQNNVKKVVPVQDRKSSG
FLNLLHKLRPNSKGESQLHRAAIRGDTSQIEELLSAGLSPNIRDHAGWTPLHEAALRGHC
EVAKALIKAGATVDIPGGPDLETPLHEAIQNGQVDFCQLLLDHGANPMFPNNNGIIPIQL
VDSSICQLKELHNSDSKSSKYNSLLNALSDIRNMLNKASLSTTVSDKDCLTNNKTLSILS
ISSATTFIERRRLRPILLGTGLTRTQQSLFTRVATMIHARVFSSISPEVTHVVTGALQEL
SSDVVDEESVNKTKKNNKSKRNSRSLKNDNELLSSNGQATCPRTLKFLSAVLQGCWILSF
DWIETCAHIKMRVEEEGFEVTGCSTAPMSGAPRRARLAREAGSLGLFHGLNICFLGNFVY
PVPSRDELTRLARSGGASVVFSRDVCSPIRLARYAIESANNSSIWDLNTVEGNQEFDQET
NDNISFIDEITMIDSNNPSSLLVLYDPGVLSKPKNESCNKSIYAVETVSKALNLIKPKKS
TNTLNSLADDLPPPLQSIPCTWLLDCAAEYRLLPFPNC
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgttcatcctacaaatgattagtttgtctcaaactcaccgtgccatcattgaactgttg
gagttgatgcgatgtgataattgcgcctccactctccaccagccattcacgactggagta
tgtgaacatctgctatgttcttcatgtattccaagccgaggtaatgtaaaggctgcaagt
tgctgtccggtttgctcagttcccgtacatgcacgcgatttccaagtccatccacagttt
acatcactcgtattggttgcacgtcgactaaaaaaattaacgatgaatacttctcaagag
aaaataaaagattctcagaattccgtaattgaaaatactattcctgatgcaactaaaaat
gagattatgttaccacaagtagtaattaaaaaggcttattcttcaagacaacagttatcc
gaagataatgattcaaagcgtccaatcggtgtaagttataaacgtgggcattccttggtt
aatagtgatacaaatatatctactgctgatacatttgtatccaatgtttgttcaactggt
aatgattcatgcattaatttcaaacctcattatccttcaaaacatgatgtcaaagccaat
aagaagcaacgattaaataaagtgaaaaaattgcctgcttattcaagctctgacattcat
caaacgttatcagtaaattctgtcaacggaaatgaatcatgtgtttctcttgataaacca
attgaatcactttctgtagaagctgttgttgtacataacactagaaatgctcggaataaa
attgtatcgaaagtttgtaaagataagatagaacctaaacaaacgatgcctagcaaaata
gatgttccagtcccattcgcttctcctgaaccttctcgtttaacagatcagtccacttta
tctccgtctgatccgatttcatttaaaacttctgtcttccttacacctgtcgatctacca
ataactaacgagaataaagcagcaacttcaaaaagttcaagtatctcaaagaagaattct
aagaagatccaaaataatgttaagaaagttgttcctgttcaggatcgtaagtcatctgga
tttctcaatttactacacaaactaagaccaaatagcaaaggtgaaagccagctacatagg
gcagcaattcgtggtgatactagtcaaatagaagagttactttccgctgggttatcaccg
aatattcgagaccatgctggttggacaccattgcatgaagctgcgttacgtggacactgt
gaagtcgctaaagctttgatcaaagctggagctaccgtagatattcctggtggtccggat
ttagagactcctttgcatgaagctatacagaatggacaagtcgacttctgtcaactgttg
cttgaccatggtgctaatcctatgtttccaaataataatgggataattccaatacaacta
gtggatagcagtatatgccaattaaaagaactgcacaattcagattctaaatcatcaaag
tataattcccttctcaatgcattatctgacataagaaatatgttaaataaagcatcatta
tctaccactgtatcagataaagattgtctgactaacaataaaactttaagtattttatct
atctcttctgcaaccactttcattgaaagacgacgtcttcgacctattcttctgggtact
ggtctaacaagaactcaacaatcattattcactcgtgttgccactatgatacatgcacgt
gtgttctcatcaatctcacctgaagttacacatgtcgtgactggtgcacttcaagaatta
tccagcgatgtagtcgatgaagaatcagttaataaaacaaaaaagaacaataaatctaaa
agaaattcccgttccctcaaaaatgataatgaattgctcagttccaatggccaagctact
tgcccacgtactttgaaatttctaagcgctgttttacagggatgttggatcttgtcattt
gattggatcgaaacttgtgctcatatcaagatgcgtgtagaagaagaaggctttgaagta
actgggtgtagtactgcccctatgtccggtgcacctcgtcgagcacgtctcgctcgtgaa
gctggctctttggggctatttcatggtttaaacatttgtttcctagggaacttcgtatat
cctgtaccatccagggatgagcttactcgattagcgcgatctggtggagcaagtgtagta
ttcagtcgtgatgtttgctctccgattcggcttgcaagatatgctattgagtctgcaaat
aattcatctatttgggatttaaataccgtagaggggaatcaagagtttgatcaagagact
aatgacaatatttcgtttatagatgaaatcacaatgattgattcgaataatccttcctcc
ttgcttgttttatatgatccgggtgttttgagtaaacctaaaaatgaatcatgtaacaaa
tctatatatgctgtagaaactgttagtaaagcgcttaatttaatcaaaccgaaaaaatct
acaaatacactaaattcattggcagatgacttaccaccacctcttcaatcgataccatgt
acttggcttttagactgtgctgcagaatatcgtctacttccttttcccaactgctga
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