Schistosoma haematobium (urinary blood fluke): MS3_00007838
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Entry
MS3_00007838 CDS
T05004
Symbol
RFC3_1
Name
(RefSeq) Subunit of heteropentameric Replication factor C (RF-C), variant 2
KO
K10756
replication factor C subunit 3/5
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03030
DNA replication
shx03410
Base excision repair
shx03420
Nucleotide excision repair
shx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MS3_00007838 (RFC3_1)
03410 Base excision repair
MS3_00007838 (RFC3_1)
03420 Nucleotide excision repair
MS3_00007838 (RFC3_1)
03430 Mismatch repair
MS3_00007838 (RFC3_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shx03032
]
MS3_00007838 (RFC3_1)
03036 Chromosome and associated proteins [BR:
shx03036
]
MS3_00007838 (RFC3_1)
03400 DNA repair and recombination proteins [BR:
shx03400
]
MS3_00007838 (RFC3_1)
DNA replication proteins [BR:
shx03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
MS3_00007838 (RFC3_1)
DNA Replication Termination Factors
ELG1-RFC complex
MS3_00007838 (RFC3_1)
Chromosome and associated proteins [BR:
shx03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
MS3_00007838 (RFC3_1)
DNA repair and recombination proteins [BR:
shx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
MS3_00007838 (RFC3_1)
Check point factors
HRAD17(Rad24)-RFC complex
MS3_00007838 (RFC3_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
Rad17
DNA_pol3_delta2
RCF1-5-like_lid
AAA
AAA_16
AAA_22
AAA_11
AAA_24
ATPase_2
Rep_fac_C
SLFN-g3_helicase
DUF815
ABC_tran
Motif
Other DBs
NCBI-GeneID:
24588496
NCBI-ProteinID:
XP_012792333
UniProt:
A0A094ZE01
LinkDB
All DBs
Position
4:30434254..30443123
Genome browser
AA seq
357 aa
AA seq
DB search
MSLWVDKYTPTSLGKLDYHKRQAKNLKKLVDSNNFPHLLVYGPSGAGKRTRIMCILRELY
GSGVDRLRMEHHTFTNPSNKKVSLSTVSSNFHLEVNPSDVGIYDRIVIQELIKSMASTAQ
LDSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCL
PIRVSAPSIDEIVEILKNTARREGHSMPVELAKRIALASERNLRRALLYAEVARWQHCPM
LPDQSVQLPDWQVFLTETALAILAEQSPKKILEVRNRLYELLCHCIPPNIIMRGLVDNLL
NSCDRNLKLELVQLGAEYEHRLNLGQKPIFHLEAFVIAFMAIYKRYIEDALGSGMEW
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgagtctttgggttgacaaatatactcccacttcattggggaagttggattaccacaaa
agacaagccaaaaatttgaaaaaattagttgatagcaacaactttcctcacttgctagtg
tatggaccttctggtgcagggaagcgaactagaatcatgtgtattcttcgtgagctgtat
ggatcaggcgttgatcgactaagaatggaacaccataccttcacaaatccttcaaacaag
aaagtcagcttatccacagtttcgagtaactttcatttggaagtaaatcctagcgatgtt
ggaatttacgaccgaatcgtcattcaagagttaatcaaaagtatggcatcaacagctcag
cttgacagtgggcaacagaaagatttcaaagtagtagttctgcacgaagcggaccattta
acacgtgacgcacaacatgctttgcgtagaactatggaaaagtacatatccacttgccgt
ctaatattgtcagcggaatctaccagtaagatcatttctgctactcgttcaagatgtcta
ccaataagagtttctgccccatctatcgatgaaattgttgaaatcttgaaaaataccgct
cgccgagaaggccattcaatgccggttgaactagctaagcgtatcgcgttagcatccgaa
cggaacctacgtagagctcttttgtatgctgaggtagctaggtggcagcattgccccatg
cttccagaccaaagtgtgcagttacctgactggcaagtctttcttactgagacagcatta
gctattttggcggaacaaagtccgaagaaaatactagaagtccgcaatcgtctttatgaa
ttattatgtcattgtattccgcccaacattatcatgagaggtctggttgacaatctatta
aattcatgtgatcgtaatttaaaactggaattggttcaattgggtgcggaatatgaacat
cgattgaatttaggccagaaaccgatttttcatttggaagcctttgtaattgcatttatg
gctatctacaaacgatatatagaagatgctctaggctctgggatggaatggtag
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