Schistosoma haematobium (urinary blood fluke): MS3_00007852
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Entry
MS3_00007852 CDS
T05004
Symbol
CPSF6_1
Name
(RefSeq) Cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03015
mRNA surveillance pathway
shx03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MS3_00007852 (CPSF6_1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
MS3_00007852 (CPSF6_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shx03019
]
MS3_00007852 (CPSF6_1)
Messenger RNA biogenesis [BR:
shx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
MS3_00007852 (CPSF6_1)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
24588508
NCBI-ProteinID:
XP_051066764
UniProt:
A0A922INE0
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Position
4:31285960..31304733
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AA seq
359 aa
AA seq
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MAGDNTEIDLYDNIDEDFVQECTDLTELYDDVIAPIKSENSSGVPSMASKHSYSSSAPPG
RRVSVYVGNLTWWTTDLDLLEAASGIGINDVIEIKFHENRQNGQSKGFCVMVFGSEQSMR
LAMDKFPKIDLHGQNPVVTSYTKHNLSVFEKAAGSDNQATARPRTEEMQTMKVSGGTTGV
LGNRLPPPLMATPTMPASLGFSVRNNSPLMGQVVPNVRNAANLSSSIQQALANHNSHSGL
GGNANVNQLPLNFPGSTGVLMPPSGMSTATLAANATGLLPSNFTLPSTIATSIATNAHVN
PNFLTQQVPGNPPMLPNSLPPGVMQLPTQNNDSSVRPQFDHYGRPVIHTYTPRKSLLIV
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtgataacactgaaatagacttgtatgataatattgacgaggacttcgtgcag
gaatgtaccgatctcacagagttatatgacgatgttatcgcaccaattaagtcagagaat
tcttctggcgttccatcaatggcctctaagcactcatatagttcttcagctcctccaggg
cgccgtgtatcagtctatgtcggtaatttgacttggtggacaacagatttagatttgcta
gaagcagcatcaggtatcggtattaacgatgttattgaaataaaatttcacgaaaaccga
caaaatggtcaatccaaagggttttgtgtaatggttttcgggtcagaacagtccatgcgt
ttggctatggacaaatttccaaaaatagatctccacggccaaaatcctgttgtcacaagc
tatacaaagcacaatttgagcgtttttgaaaaagccgctggcagcgacaatcaggctact
gcccgacctcgcacggaagaaatgcagacaatgaaggtgtctggaggcactactggtgtt
ttggggaaccgcttaccgcctccattaatggctacacctactatgcctgcatcacttgga
ttcagtgtacgcaataacagtcctttgatgggacaagtcgtcccaaacgttcgaaatgca
gccaatctgtcatctagtattcaacaagctcttgctaatcacaattcacactccggctta
ggcggaaatgcaaacgtaaatcaattgcctttaaactttccgggttcaaccggcgttcta
atgcctccgagtggcatgtcaacagcaaccttagcagcaaatgctacaggactattaccc
tcaaacttcactcttcctagcacgattgcaacatccatcgcaacaaatgctcatgtgaac
ccaaattttttgacacaacaagtaccgggaaatcctccgatgttaccaaattctttgcca
cctggtgtaatgcagttgcctactcagaacaatgattccagtgtaagaccacagtttgat
cattacgggagaccggttattcatacttatacccctcgtaagtccttattaatagtttag
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