KEGG   Schistosoma haematobium (urinary blood fluke): MS3_00008009
Entry
MS3_00008009      CDS       T05004                                 
Symbol
ELL2_1
Name
(RefSeq) Elongation factor, RNA polymerase II, variant 2
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
shx  Schistosoma haematobium (urinary blood fluke)
Pathway
shx03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:shx00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    MS3_00008009 (ELL2_1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:shx01009]
    MS3_00008009 (ELL2_1)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shx03021]
    MS3_00008009 (ELL2_1)
Protein phosphatases and associated proteins [BR:shx01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     MS3_00008009 (ELL2_1)
Transcription machinery [BR:shx03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     MS3_00008009 (ELL2_1)
    Little elongation complex (LEC)
     MS3_00008009 (ELL2_1)
SSDB
Motif
Pfam: ELL Occludin_ELL FAA_hydro_N_2
Other DBs
NCBI-GeneID: 24589007
NCBI-ProteinID: XP_035587172
UniProt: A0A6A5DG89
LinkDB
Position
4:38020932..38038468
AA seq 842 aa
MSLRCLKDSSFVFDDASYNDLELVHFRLTDSALKHIEQLASSSGNHKFSITFSGSEGSFI
VPVGKSSSRFTFSTSSLTSTHDESFNCLRTKGVSTHCLGRMVSRITVNAKEDSFSAAKER
MTQLEDENKKSQTKEIKSAKSMASRTAASQSTHKQGNQGVNLKGKGNEISPQNIDFPNVA
NRVQSQNPVGCGPSPPLSNPDVLARSLRERIIHILALRPYQRPELLLRLSRDGLSHIQKD
QISDILSSVGRVGRQSAYYLIPSVVSELDENWPGYTGAERKRIISLKTSQQSQTPPKSPT
DRSRTASPDNSSTPSDDQFTRRPTRANAPSAPHALSKKIAALDMLCAGVSDVEVAARLGV
FRGLLDQWRANESELREKFRRLNANTNSAPSTQISGFNQHSQVYDKSVGVRHQNPTMSTA
NDVVGSQRSTSTNPGNTISPHKRAKLDVPNTPSSSADQQTDLTYSTSDKTVSRSSIMHSF
PNQNNDDHNNQTNTISPPLHDNPHTLDTYSRSNQPCTYNIAGGSEGESAEHTPFSNSSTG
SSGYGGSNNGLTASSGVVNSSINIDNRREGLIGSTSRCHLTMSVHSECLSSRLKAEDQLS
NGNTTNTPAYGITEQALSQSIVGTDGFHVGDLSSKLAEIDRLYPEISTSEQASMYLAEFE
CTYPTYLRMYHSFSDIWKTVSNLRSQLLEATRTEGFDSATTTHLANQLDKFIRRSRSQKY
RDDEIQLTLMVHKLRLLKQRLAVSQHNNNGGRHRDRILPVTTSDDVTGDRIDRLPRSNNN
NNIKSISMKSSSSKVSSMPNNNIAQSSNNNENKNSSRLINNCYRQLLTDSNDYSSLLPCN
QV
NT seq 2529 nt   +upstreamnt  +downstreamnt
atgtctctccgctgtctgaaggactctagttttgtgttcgatgatgcttcatataacgat
ctggaactagttcactttcgtcttactgattctgccttgaaacatattgagcaacttgct
agcagttcaggaaaccacaaatttagcattacgttcagtgggtccgaaggatcatttatt
gttcctgtcgggaaaagcagcagcagatttacattcagtacctcaagcttaacaagtact
cacgatgaatctttcaattgcttgcgcaccaaaggagtttcaactcattgtctgggaagg
atggtctccaggatcacggtcaatgctaaggaggatagcttctcagcggctaaggagcga
atgacacaattagaagacgaaaacaaaaagtctcagacaaaagagattaaatctgctaaa
tccatggcttcaagaacagcagcatctcaatccactcacaaacaaggcaatcagggtgtg
aatttgaagggaaagggaaatgaaatttcacctcagaacatagatttccctaacgtagcc
aaccgagttcagtcccagaatcctgttggttgtggtcccagtcctccactatctaatcca
gacgttttggcacgctcactgagagaacgcattattcacatactggcattacggccttat
cagcgccccgaattattattacggttgtctcgtgatggcctatctcatatccagaaagac
caaatatccgacatattgtcgtcagtgggtcgtgttggaagacagtcggcatattacctt
ataccgtctgtggtatcagaattagatgaaaactggccaggttatactggtgctgagaga
aaacggatcatttctttgaagactagtcagcagtctcaaactcctcccaaatctcccact
gaccgatctcgaaccgcttctcctgacaactcgtccaccccctcggacgaccagtttact
cgacgtccaacacgagcaaatgctccttcggcacctcatgcattgagtaagaagattgct
gcactagatatgttgtgtgcaggtgtgagtgatgtggaagttgccgcccgtctaggagta
ttccgtggactgttggatcagtggcgagccaatgaatcagaacttcgagagaaatttcgt
cgactcaatgcaaacacaaattcagcaccctcaactcagatctccggtttcaatcaacat
tcccaggtgtatgataagtctgtcggtgttcgtcaccaaaatcctactatgtccactgca
aatgatgttgttggcagtcaacgttctacttcaacaaatcctggaaatacaatttctccc
cataaacgtgctaaattagatgtgcccaatacaccctctagttctgctgaccaacaaaca
gacttaacatattctacctctgataaaactgtttcaagatcatccattatgcattcattt
ccaaatcaaaacaatgatgatcataataatcaaactaatactatttctcctccacttcac
gataaccctcacacacttgatacgtatagtcgttcaaatcaaccctgtacatataatata
gccggtgggagtgagggagaaagtgccgaacatactccattctccaattcaagtactggt
agcagtggttatggtggttcaaacaacggcttaactgcctctagtggagtagtaaacagt
agtattaatattgacaatcgccgtgaaggattaataggatctacatctcgatgccatttg
acaatgtctgttcattctgaatgcttgtctagtcgcttaaaagctgaagatcaattgtct
aatggtaatacaacaaatacaccagcatatggtataactgaacaagctttgtctcaaagt
attgtcggaacagatggttttcatgtaggcgatttgagcagtaaattggctgaaatcgac
cggctttatccagaaatctcaacatcagaacaagcttcaatgtatttagctgaatttgaa
tgtacctatccaacttatcttcgaatgtatcattcattctcagatatttggaaaactgtc
agtaatctacgaagtcaattattagaagccactagaactgaaggtttcgatagtgctact
acaacccatttagcaaatcaattagataaatttatacgtcgttctcgttcacaaaaatat
cgtgatgatgaaattcaattaacattgatggtacataaattacgattgttaaaacaaagg
cttgctgtatcacaacacaataataatggtggtcgtcatcgtgatcgcattctacctgtt
actactagtgatgatgtaacaggtgatagaattgatcgtcttcctaggagtaataataat
aacaatataaaatctatttcaatgaaatcatcatctagtaaagtatcttcaatgcctaac
aacaatattgctcaatcatctaataataatgaaaataaaaatagtagtcgtcttattaat
aattgttatcgtcaattactaactgattcaaacgattattcaagtctactcccatgtaat
caagtttga

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