Schistosoma haematobium (urinary blood fluke): MS3_00008099
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Entry
MS3_00008099 CDS
T05004
Symbol
THOC2_1
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03013
Nucleocytoplasmic transport
shx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MS3_00008099 (THOC2_1)
09122 Translation
03013 Nucleocytoplasmic transport
MS3_00008099 (THOC2_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shx03019
]
MS3_00008099 (THOC2_1)
03041 Spliceosome [BR:
shx03041
]
MS3_00008099 (THOC2_1)
Messenger RNA biogenesis [BR:
shx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
MS3_00008099 (THOC2_1)
Spliceosome [BR:
shx03041
]
Complex C
Other components
EJC/TREX
MS3_00008099 (THOC2_1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
MS3_00008099 (THOC2_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
YlqD
VMAP-M1
ABC_tran_CTD
Motif
Other DBs
NCBI-GeneID:
24595283
NCBI-ProteinID:
XP_051067032
UniProt:
A0A922IPC7
LinkDB
All DBs
Position
4:complement(41372983..41434685)
Genome browser
AA seq
1512 aa
AA seq
DB search
MTNILGHKYHFTQEPGVNTPESLYKVSAFLIWKKLIDLDVLYGHLTPSDADIQQSHNRQI
NLAKSYRPQPPASLSYSATSAINTSLNTAINCDLIRVDGLLSQDSQLGGSGTTSVSGTLM
TNDWTGPRTSGALTSRSAEELMQLEENPDVNLSKTNSHDVSEVGMIDISIDQDGLYENNQ
KLELCAAMVRLGDWTNAQRLLERLPGYWATTYEPLTRDICNLLHCLIEPLYNKACPLPAC
LQRNRFRPRIESFKALNASINLHGIDEKSSVDCEIHEDSRTITNNNNNNNDCILLSPVHD
FVGLAKYVIPIAIYLGPHMSYDLILIVKFCRLGQIYLSEQQQNLRSDKIGIVYQGFFNLL
DEVLLPSLSLVDANCCLAEEIWQMLRFLPYEHRYRLYGQWKHFNVQTEPSLIRRRAQVMC
YAKAIMKRLSKENVKPMGRHLGKLSHSNPGLLFDHVLHTVQLFTNLINPVVEALKYVSSL
GYDMLTFCIIEALATDQSKLEDLQLSQGLQALSLFTGLLCRKYQFDLAGLLQYVLNQLKV
GKSYDLAILREILHRMSGIDISEEMTEEQLESMSGGELLLQEGGYYAQIRNTRRNAGRLK
DALVEHNLIMPFIFLMAQQRDAIIFLDDPERHCKLAGRLYDQCQGTLVQFITFLSLQLTR
DEMQTQCLNIDRMMGEFHVPADTAFCFHRNLFEQKVARLFESKEQAETMKSGEKSKSFSK
TIFSAASLHVCNEIAAAIRPLYPARVWDELGIVFFITFWSLQSSDLVVPESAYQRQIQQL
KEQIQQIDTPASGWNSTKKKREIERLENLIERLTNEQAEREEHVTRVRAWLMTERDNWFQ
TRLATKTDTITQFLQLCIYPRVCFTATDAIYAAQFMHVLHQLKTARFSTLICLDRIFNDI
TLPTSMCTENEAHRYGRFLCAVLELVMRWHASEEVFNQECGQYPGFVTVFRKTYQGLDAN
TKPDQLQYENYRHVVHKWHYRITKAIVACLESGNYVQIRNALIVLTRILPQYPKITQFGS
AVERRVNKLKDEEKDRRPDLKALAFSYAGLMRPRKVKWVSEEEFHLKETKPIRSETNTNY
SSNHQSINSGGNTNRTVSNPDNSSGTTVNSTSYGHNPRGHSGSNQLTSFSNAPSNINNTS
CGITNTNTSSSGSGGNNTIFVTSISNSSSSSATLEPPHISVSVRRTSTQPPPSNQTSKIP
SNSTVAPSGSVLETRSRPQTVNASITAVESSKCNPSGQLSGSVSLSSVTAVSNSSSSNNL
SNNSPSIPTTTQSKLRSSQRFESSLPPPDDDVASVPGPQSHSSKRRRMEAASANLTSPNG
CILSVTTSKASVNTVDEPRESHKSSTRKRSTPTTIPGSAPITPETAIQNLRYTNAGIVSN
TVPSVNSCSGGSSGTGSRSTTSPGENVYPVNSSLRHHHHHQSRQSSHQRASSGNSTESRE
PSLENERNLIASSSAGLVKKAKKAHHHHHHQRSSLDSMNMESNLNNNINNNPGSITIYST
SESQGPSRHSRR
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgactaatatattgggacacaaatatcattttacacaagaacccggtgtcaatacacca
gagtcattgtacaaagtttcagcatttttaatttggaaaaagttaattgacttggatgta
ttatacggacacttaactccatccgatgcggatattcagcaatctcataatcgtcaaatt
aacttggctaaatcttatcgtccacaaccgccggcaagtttatcttattcagcaacttct
gcgatcaatacctcgttgaatactgcaatcaactgtgatttaattcgtgttgatggtcta
ttgagccaggattctcaacttggtggtagtggtactacttctgtttctgggacattgatg
acgaacgattggactggtcctaggacgtcaggagcgctaacttctcgctctgcagaagag
ctaatgcaattggaggagaatcccgatgtaaatttaagtaaaacgaattcacatgatgtt
agtgaagttggtatgatagatataagtattgatcaagatggattgtatgaaaataaccaa
aaattggagttatgtgctgccatggttcgtttaggcgattggacaaatgctcaacgtctg
ttagaacgcctacctggttactgggcaactacatatgaacctttaacacgagacatatgc
aatttgttgcattgtttaattgaacctttgtacaataaagcttgccctttacctgcctgt
ttacaacgtaatcgttttcgaccgagaatcgagtcattcaaagcattaaatgcatctatt
aatttacatggtattgatgagaaatcgtctgttgattgtgaaatacatgaagacagtcgg
accattacaaataataataacaataataatgattgtattctattatcacctgttcatgat
tttgttggccttgccaagtatgtaataccaatagcaatttatttaggcccgcatatgtca
tatgatttaatattaatagtgaagttttgtcgtcttggtcaaatatatctttctgaacag
caacaaaaccttcggtctgacaagattggaattgtttatcaaggattttttaatttatta
gatgaagtgcttcttccgtcgttgagtttggttgatgctaattgttgtttggctgaagag
atttggcagatgttacgatttttgccttatgaacatcgatatcggttatatggacaatgg
aaacatttcaacgttcaaactgaacctagcctaatacgtcggcgggctcaagtaatgtgc
tatgctaaggcgattatgaaacgattgagcaaggaaaacgttaaaccaatgggtagacat
cttggaaaattgtcacacagtaatccaggtttattatttgatcacgtcttgcatacagtt
caactgtttacaaatcttataaatcctgttgttgaagcattgaaatatgttagcagttta
ggctatgatatgctaactttttgtattattgaagcacttgccacagatcaatcgaaactg
gaagatttacaattaagtcaaggtttacaagcattgtcgttgtttactggattgttgtgc
agaaagtatcaattcgatttggctggtttgttacaatatgtactgaatcaattaaaagtt
ggtaaaagttatgatttggcaatattacgtgaaattctccatcgtatgtctggtatcgat
atctcggaagaaatgacggaagaacaattagaatccatgtcaggtggtgaattactattg
caagaaggtggttattatgcacagatacgtaacacacgtcgtaatgctggacgtcttaaa
gatgccttggttgaacataatttgatcatgccatttatttttttaatggctcaacagcgt
gatgctatcatatttctagatgatccagaacgtcactgtaaattagctgggcgtttatat
gatcagtgtcaaggtactcttgtacaattcataacatttcttagtcttcaattaactcgt
gatgaaatgcaaactcagtgtttaaatattgacagaatgatgggtgaatttcatgttcca
gctgatactgccttttgttttcatcgtaatctgtttgaacaaaaagttgctcgtttattt
gaaagcaaagaacaagcagaaacaatgaaatctggtgaaaaatcaaagtcattcagcaag
acaattttctcagctgcttctttacatgtgtgcaatgaaatagctgcagctatacgtcca
ttatatccagctcgtgtatgggatgaattaggcattgtgttctttatcacattttggagc
ttacagtcaagtgatttagttgtccccgaatccgcctatcaacgacaaatacaacaatta
aaagagcagattcaacaaattgatacgccggctagtggatggaattcaacaaaaaagaaa
cgtgagatagaacgtttagaaaatttaattgaacgtctaaccaatgaacaagctgaacgg
gaagaacatgtaacacgtgtacgtgcttggcttatgactgaacgtgataattggtttcaa
acacgattagctacaaaaactgatactattacacaattcttacaattatgtatatatcct
agagtgtgtttcaccgcaactgatgctatctatgcggcacaatttatgcatgttttgcat
caattaaagactgcacgattctctacgctgatttgtttggatcgaatttttaatgatata
acgttgccaaccagtatgtgtacagaaaatgaagcgcatcgttacggtcgatttttatgt
gcagtcttagaacttgtgatgcgttggcatgccagtgaagaagtgttcaatcaagaatgt
ggtcaatatcctggttttgttactgtcttcagaaagacatatcaaggtttagatgcgaat
actaaaccagaccaattgcagtatgagaattatcgtcatgttgtacataaatggcattat
cgtattacaaaagcaattgttgcttgtctagaatctggtaattatgttcaaattcgcaac
gcattaattgtattaacacgaattctacctcaatatccgaaaatcacacagttcggaagt
gctgttgaacgacgtgtaaataaactaaaagatgaagagaaagatcgacgtcctgattta
aaggctttagcattcagttatgctggcctaatgcgtccacgtaaagttaaatgggttagt
gaggaagaatttcatttgaaagaaactaaaccaattcgctcagagacgaatacaaattat
tcaagtaatcatcaaagcatcaacagtggtggtaacactaatcgtactgtatcaaatcct
gacaatagttccggaactactgtcaactcaactagttacggtcataatccacgtggacat
tccggttcaaatcaattgaccagtttttcgaatgcgccttcaaatataaacaacactagt
tgtggtatcaccaatactaataccagtagtagtggtagtggaggcaacaacacaattttt
gttactagcatcagtaattcatctagtagttctgcgacacttgaacctccacatatttca
gtatctgttcgacgtacttcaacacaaccaccaccatcaaatcaaactagtaaaatccca
tccaactcaactgttgctccaagcggtagtgttctggaaacacggtcacgacctcaaaca
gtgaatgcgtctataacagccgtagagtcttcgaaatgcaatccttctggtcaactatcc
gggtctgtgtcactgtcctcggtaacagctgtgagcaattctagtagttcgaataatttg
agcaataattcaccttccattccaacaactacccaaagtaaattacgatctagtcaacgt
tttgagtcatctctaccacctccagacgatgatgttgcttctgtaccgggaccacaatca
cattcatcgaaacgacgcagaatggaagcggccagcgcgaatttgactagtcctaatggg
tgcattttaagtgtgacaacatccaaggcatcagtgaacacagttgacgaaccacgtgag
tcacataaatcttccacacgtaaacgttcaactcccacaactattccaggaagtgcaccg
atcactccagaaactgctatacaaaatttacgctacacaaatgccggtatagtttccaac
actgttcccagtgttaattcttgcagcggcggtagtagtggtactggtagtcgttcaaca
acaagtcctggtgaaaatgtttaccctgttaattcttctctacgtcatcatcatcatcat
caatctagacagtcgagtcatcaaagagcatcatcaggtaattctactgaaagtagagaa
ccaagcttagaaaatgaacgaaatttaattgcttccagttcagcaggtttggtaaagaaa
gcaaagaaagctcatcatcaccaccatcatcaacgttcgtcattagattcaatgaatatg
gaatctaatcttaacaataatattaataataatccgggttctattactatatattcaact
tcagaatcccaaggaccatctcgacattcacgtagataa
DBGET
integrated database retrieval system
