Schistosoma haematobium (urinary blood fluke): MS3_00008827
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Entry
MS3_00008827 CDS
T05004
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MS3_00008827 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shx03041
]
MS3_00008827 (CDC40)
Spliceosome [BR:
shx03041
]
Complex C
Other components
Step II factors
MS3_00008827 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SPT8
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
WDR54
NBCH_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
24594447
NCBI-ProteinID:
XP_012798476
UniProt:
A0A095AVW0
A0A6A5DFU9
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Position
6:complement(23175226..23192610)
Genome browser
AA seq
588 aa
AA seq
DB search
MDGIVTYESSSSDDEIPKQDTAPTQLLKSSLIKSIDVAPVVEHKDEFLSLVPVDPQSHEL
IHNPTYEELFAPSFGPVNPFKSEKQLAPKNTLTGYVEEAHVNKFAFENQHRTFMTYGYAE
DPSVEGGADRRLVGETESMTENEGKTAFEKRQKRKGDLRKRDSNWDPTSEDYTGPWAKYK
DEVTVSVPSEEDRVYLEAYLAKKASKRKVVEEAPIEEKSTLHIPTPYDYQGRSFLHAPHD
IPNVNLRATDPPERCFLPKRQIHEWISAHARGVAAIRLFPHTGHLMLSAGMDSKIKLWEL
YKERRLIRSYMGHRQAVRDVSFNSNGTAFLSASYDRYVKLWDTEIGKCTNQFNLKRVAYC
VQFNPDEDKQHLFLVGCADKKILCYDTRSGEVVQQYDRHLGAVNAVAFVDNNRRFVSTSD
DKSLRVWEWDIPVDFKYLADPSLHSMPAVSVSPNGKYLICQSLDNQLVVFNIFAGFKRMR
KKIFRGHMVSGYACTVDMSPDMRYVISGDGDGYLCLWEWKTTRLLTKWKAHDGVCINCAW
LPHETSKVITAGWDGNILSWSSCAALACNKSFPIALGGLSVSTNLVKE
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggatggaatcgtcacgtatgaatcctcttcctctgatgatgaaattcccaaacaagat
actgctccaacacaacttttaaaaagtagtttaattaaatccatcgatgttgcgccagtt
gtggaacacaaggatgagtttctatctcttgtgcctgttgatccacaatctcatgaactt
attcataatcctacttatgaagaattattcgcaccatctttcggtccagtcaatccgttt
aagtctgaaaaacaattggctcctaaaaatactttaactggatatgttgaagaggctcac
gttaataagtttgcttttgaaaaccagcatagaacttttatgacttatggttacgcagaa
gatccttctgttgaaggaggtgctgatcgacgtttagttggagagacagaaagcatgaca
gaaaatgaaggaaaaactgcatttgaaaagcgccagaaacgaaaaggtgatctacgtaaa
cgtgatagtaattgggatccaacgagtgaagattatactggaccatgggctaaatataaa
gatgaagtaactgtttcggttccttctgaagaggatcgtgtttatttggaagcatattta
gcaaagaaagctagcaaaagaaaagttgtcgaagaagctccaattgaagaaaaatctaca
ctgcatataccaacaccatatgattatcagggtagaagtttcttgcatgcaccacatgat
ataccgaatgtgaatttacgagcaactgatccaccagaaagatgctttttacctaaaaga
caaattcatgaatggattagtgcacacgcacgtggtgttgcagcaattcgcctgttccct
catactggtcatttaatgttatctgctggaatggattcaaagattaagctttgggaatta
tataaagaacgtcgattaattcgtagttatatgggtcatcgtcaagctgttcgtgatgta
tcatttaatagtaatggaacagcatttttaagtgcatcttatgatcgttatgtaaaatta
tgggatacagaaattggtaaatgtacaaatcaattcaatttaaaacgtgttgcttattgt
gtacaatttaatccagatgaagataaacaacatttatttttagttggttgtgctgataaa
aaaatattatgttatgatacgcgtagtggtgaagttgtccaacagtatgatcgtcattta
ggcgccgtcaatgctgttgcatttgtggataataatagaagattcgtttcaacatccgat
gataaatcgttacgtgtatgggaatgggatattccagtggattttaaatatcttgctgat
ccttctttacattcaatgccagcggttagtgtttcaccgaatgggaaatatttaatttgt
caatctcttgataatcaattagttgtatttaatatatttgctggttttaaacgtatgcgt
aaaaaaatctttcgtggtcatatggtgtcaggttatgcatgtactgtagatatgtcacca
gatatgcgttatgtaatctctggtgatggtgatggttatttatgtttatgggaatggaaa
acaactagattattaacaaaatggaaagcacatgatggtgtatgtattaattgtgcatgg
ttaccacatgaaacatcgaaagtaatcactgccggttgggatggaaatatactatcctgg
agctcatgtgcagcgttggcttgtaataagagttttccaattgctctaggtggactgtcc
gtatccaccaacttggttaaagagtag
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