KEGG   Schistosoma haematobium (urinary blood fluke): MS3_00008840
Entry
MS3_00008840      CDS       T05004                                 
Symbol
CAF1_2
Name
(RefSeq) CCR4-Not complex caf1 ribonuclease subunit Caf1, variant 2
  KO
K10752  histone-binding protein RBBP4
Organism
shx  Schistosoma haematobium (urinary blood fluke)
Pathway
shx03082  ATP-dependent chromatin remodeling
shx03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:shx00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    MS3_00008840 (CAF1_2)
   03083 Polycomb repressive complex
    MS3_00008840 (CAF1_2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:shx03036]
    MS3_00008840 (CAF1_2)
Chromosome and associated proteins [BR:shx03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     MS3_00008840 (CAF1_2)
  Histone modification proteins
   HAT complexes
    HATB complex
     MS3_00008840 (CAF1_2)
   HDAC complexes
    Sin3A-HDAC complex
     MS3_00008840 (CAF1_2)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     MS3_00008840 (CAF1_2)
    PRC2.2
     MS3_00008840 (CAF1_2)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     MS3_00008840 (CAF1_2)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    MS3_00008840 (CAF1_2)
  Chromatin remodeling factors
   NuRD complex
    MS3_00008840 (CAF1_2)
   NuRF complex
    MS3_00008840 (CAF1_2)
   NuRF complex (fruit fly)
    MS3_00008840 (CAF1_2)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 WD40_WDHD1_1st EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_SPT8 ANAPC4_WD40 eIF2A Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_RIG_1st WD40_MABP1-WDR62_1st MIOS_WD40
Other DBs
NCBI-GeneID: 24589658
NCBI-ProteinID: XP_012793532
UniProt: A0A095BXL6
LinkDB
Position
6:23680833..23690585
AA seq 421 aa
MPETDAGYEDGVEERVINEEYKIWKKNTPFLYDMVMTHALEWPSLTAQWLPEVTRPEGKD
FSIHRLILGTHTSDEQNHLLIASVHMPNDNAQFDPNSYDVERGEFGGFGAVTGKIEINIK
INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPSGVCRPELRLRGHQKEG
YGLSWNPNLNGYLLSASDDYTICMWDINATPKEGRIIDAQTIFTGHTSVVEDVSWHPLHE
SIFGSVADDKKLMIWDTRSGCTTRPSHTVDSHLAEVNCLSFNPFSEYILATGSADRTVAL
WDLRSLQMKLHSFESHKDEIFQVQWSPHHETILASSGTDRRLHVWDLSKIGEEQSAEDAE
DGPPELLFIHGGHTAKISDFSWNPNDAWVICSVSEDNILQVWQMAENIYNDEELPLTIEN
E
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcctgaaactgatgcaggttacgaagatggtgtggaagaacgtgttattaatgaagaa
tataaaatttggaaaaagaatactcctttcctgtatgatatggttatgactcacgccctg
gaatggccaagccttacagctcaatggttacctgaagtcacaagaccagaaggtaaagat
ttttctattcatcgacttatcttgggaactcatacatctgatgaacaaaatcacttactt
attgctagtgttcatatgccaaatgataatgcccaatttgatcctaatagttatgatgtt
gaacgtggtgagttcggtgggtttggtgcagtaaccggtaaaattgagatcaatataaaa
atcaatcacgagggtgaagtaaatcgagctcgttatatgccacagaatccatgtgtaatc
gctactaaaacgcctagttctgatgttttggtgtttgattataccaaacatccaagtaaa
cctgatccatctggtgtatgtcgaccggaattacgtttaagagggcatcaaaaagaaggt
tatggtttatcatggaatccaaatttaaatggttatttgttgtctgcgtcggatgattat
actatttgtatgtgggatattaatgcaactccaaaagaaggtcgtattatagacgctcaa
actatattcactggtcatacaagtgttgtagaagatgtcagttggcatccattacatgaa
tctatatttggttcagttgctgatgataaaaaacttatgatatgggatacacgtagtggt
tgtacaacacgtcctagtcatacagttgattcacatttagctgaagttaattgtttatca
tttaatccatttagtgaatatatattagccactggtagtgctgatcgaactgttgcacta
tgggatttacgtagtttacaaatgaagttacattcatttgaatcgcataaagatgaaata
tttcaagttcaatggtcaccacaccatgaaactattcttgctagctcaggtaccgatcga
cgtctacatgtttgggatcttagtaaaattggtgaagaacaatcagctgaggatgctgaa
gatggaccaccggaattactgttcattcatggtggacatacagcgaaaatttcagatttt
tcatggaatccaaatgatgcatgggttatttgttcagtatctgaagataatatattacaa
gtgtggcaaatggctgagaatatttacaatgatgaagaacttccactgaccattgaaaat
gaatag

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