Schistosoma haematobium (urinary blood fluke): MS3_00008928
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Entry
MS3_00008928 CDS
T05004
Symbol
XAB2
Name
(RefSeq) Pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MS3_00008928 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shx03019
]
MS3_00008928 (XAB2)
03041 Spliceosome [BR:
shx03041
]
MS3_00008928 (XAB2)
Messenger RNA biogenesis [BR:
shx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
MS3_00008928 (XAB2)
Spliceosome [BR:
shx03041
]
Complex B
Other components
Prp19-related factors
MS3_00008928 (XAB2)
Complex C
MS3_00008928 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_15
Suf
TPR_19
TPR_2
SNAP
MTBP_N
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
24596717
NCBI-ProteinID:
XP_051064648
UniProt:
A0A922II84
LinkDB
All DBs
Position
5:complement(1555623..1577345)
Genome browser
AA seq
789 aa
AA seq
DB search
MPRIWIDYLMFLMSQGLITRTRHAFDRALKALPITQHDRIWNLYLRFADRHGHKINETCV
RIYRRYVKFAPDDMERFVNFLIQHGNANEAAVVLSEIINDDSFMSREGKSKFQLWNQLCN
LLVKNPLKITSLKADPIIRQGIHRYTDQVGVLWNSLADYHIRCENLARARDVYAEALSSV
STVRDFTQVFDAYAEFEESMAKAKMAALEQSDVTEDDELDVELYLARLESLMDRRPLLLN
SVLLRQNPHNVADWLKRVELLKSQGAREQIAAFMEGITSVDPAKATAGRPSSLWTGLSRL
YEEHGQLNDARVVLEKATGVAFMHVEDLAAVWCEWAEMEMRHDQPEAALRLLGKATTAPS
RKVDYYDRSEPVQARLHKSLRLWSLYTDLEESFGTFETTKAAYDRMIDLRIATPQIIMNY
ALFLEELNYFEDAFKAYEKGVALFRWPNVYDIWATYLSKFIERYGGNKLERARDLFEQCL
EKCPPKYAKALHLLYARLEEQHGLARRAIRIYERATEAVLPEERFEMFNIYIQRIADLHG
VTHTRSAYEQAIERLPEEHSRKMCLRFADLERKLGEIDRARAVYAYCAQMCDPRTETQFW
QIWKEFEVTHGNEDTLREMLRIRRSVQATYNTRVSFVASQLQLNEENPITNAPKDEMQKL
DKSQTEINIISTKSSLTCGRPMVQFQSAGIKQLGLMNEKDDKQQKASANIEEIDINVDEG
EEEEETDDDSMGEQELKETINEDNIECRVSSKRRRKDHPDDIDIENQPVPLAVFGSLKKA
DDDDDDEDS
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtatatggatagattatttaatgttcttaatgtcacaaggattgattactcga
acaagacatgcttttgacagggcattgaaagctttaccaatcacccaacatgataggata
tggaatttgtatttaagatttgctgatagacacggtcataaaattaacgagacctgtgta
cgaatctacagacgatatgtaaagtttgctccagatgatatggaacgttttgtcaatttt
cttattcaacatggaaatgccaatgaagccgcagttgtcttatctgaaataatcaatgat
gatagttttatgagtcgtgaaggaaaatcgaaattccaattgtggaaccaattatgcaat
cttttggttaaaaatcctttgaagattacgtcgctgaaagcagatcctattattcgtcaa
ggaattcatcgttatactgaccaggttggtgttctgtggaattctttagctgactatcat
atacgttgtgaaaatcttgcacgggccagagatgtttatgcagaagcattgagtagcgtc
tcaacagttcgtgatttcactcaagtttttgatgcctatgctgaatttgaagaatcaatg
gcaaaggcaaagatggctgctttggaacaatctgatgttacggaagatgatgagttggat
gtcgaattgtatctagcacgtcttgaatctctcatggatcgtcgtcctttactcttaaat
agtgtgttgttacgtcaaaatcctcataacgtagcggattggttgaaacgtgttgaatta
ttgaaaagtcaaggagcacgtgaacagattgcagcattcatggagggcattacatcggtt
gatccagctaaggcaacagcaggtcgtccatcatcattatggactggtctgtcacgttta
tatgaagaacatggtcagttgaatgatgcacgagtagtacttgaaaaagcaactggtgtt
gcttttatgcatgttgaagatttagcagctgtatggtgtgaatgggctgaaatggaaatg
cgtcatgatcaacctgaagcagcacttcgtttgttagggaaagctactactgcaccatca
cgtaaagtcgattattatgatcgttcagaacctgttcaagcacgactccataaatcttta
cgtctttggtcgttgtatacggatttagaagaaagttttggtacatttgaaacaacaaag
gctgcttatgatcgaatgattgatctacgtatagcaactcctcaaattattatgaattat
gcattattcctggaagaattaaattattttgaagatgcttttaaagcatatgaaaaaggt
gttgcattatttcgttggccaaatgtttacgatatatgggctacttatttgtctaagttt
attgaacgttacggtggaaataaattggaacgtgctcgtgatttatttgaacaatgtcta
gagaaatgtccaccgaaatatgctaaagcgttacatttattgtatgctcgacttgaagaa
caacatggacttgcacgtcgtgctattcgtatttatgaacgagctacagaagctgttctt
ccagaagaaagatttgagatgttcaatatctatattcaacgtattgccgatcttcatggt
gttacgcatacacgttcagcgtatgaacaagcaatagaacgtttacctgaagaacattcg
cgtaaaatgtgtttaagatttgctgatcttgaaagaaaattaggtgaaatcgatcgagca
cgagctgtttatgcttattgtgcacaaatgtgtgatcctcgaactgaaacacaattttgg
caaatatggaaagaatttgaagtaacacatggtaatgaagatactctacgtgaaatgtta
cgaattcgacgtagtgtacaagcaacttataatacacgtgttagttttgttgcaagtcaa
ttacaattgaatgaagaaaatccaataacaaatgcaccaaaagatgaaatgcaaaaatta
gataaatcacaaacagaaattaatattataagtaccaaaagtagtttaacttgtggtcgt
cctatggtacaatttcaatcagctggtataaaacaattaggtttaatgaatgaaaaagat
gataaacaacaaaaagctagtgctaacattgaagagattgatatcaatgttgatgaagga
gaagaggaagaggagaccgatgatgattcaatgggagaacaagaattaaaagaaacaata
aatgaagataatattgaatgtagagtatctagtaaacgacgaagaaaagatcatccagat
gatattgatattgaaaatcaacctgttccattggcggtatttggtagtttaaagaaggcc
gatgatgatgatgatgatgaggacagttga
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