Schistosoma haematobium (urinary blood fluke): MS3_00010794
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Entry
MS3_00010794 CDS
T05004
Symbol
UPF2
Name
(RefSeq) Regulator of nonsense transcripts upf2
KO
K14327
regulator of nonsense transcripts 2
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03013
Nucleocytoplasmic transport
shx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
MS3_00010794 (UPF2)
03015 mRNA surveillance pathway
MS3_00010794 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shx03019
]
MS3_00010794 (UPF2)
Messenger RNA biogenesis [BR:
shx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
MS3_00010794 (UPF2)
mRNA cycle factors
P-body specific factors
MS3_00010794 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Synaptobrevin
PHD20L1_u1
NCH3
Motif
Other DBs
NCBI-GeneID:
24597247
NCBI-ProteinID:
XP_051067897
UniProt:
A0A922IR49
LinkDB
All DBs
Position
2:complement(24909554..24939595)
Genome browser
AA seq
1351 aa
AA seq
DB search
MNEQDQIISEIDRKQVTEFIVEASERLSLRTTLLEQNLAVAGKWPDDSFFVKKDSTLKKN
TAFVKKVRNFLDSQKDALLSEFESLNLSKYVEEVATAIVEAKIKLTDIPFMLKLCSAMYQ
RYSDFGVLFFDAWKKSFSSHKDLKNTNLSKLRVDLALFADLNTIGIFRDADGIRLLAGQL
TLLTANDHDNFSNIGIISSFCRHCSDDWIGVIPRRIRLLSEKYEMPVPRSVFMSSERQAK
CRTLFNDYLAGAMHRLQNMFKETQRIISGNRDQLENRGEVSEERQERAEHLMSACRKFHE
SLSTLADLLDADPPVDFSSMIKDESMSDLTAPDSVEKVIHEEVNLFEDEDTRLFYESLPD
IKAMVPAILYKESEQAGVESNQSKNEDGDPAGSEDIDIDTVESELAKEEALIRVSEDGNE
STNCTSIPDKSKPYLLNTDDGEEDLNPSGKVLMETFLTQLPNCINRDLIDRAAIDFCLNL
NKRANRRRLAKALFSVPRTRYDLLPFYARLVASLAPVMPDLVQDINSMLTAEFRWRLSKR
DQLNIESKLKVVRFIGELVKFKIYPAHQALTCLKQILPQFVHHNIDMACALLDTCGRFLY
RLPISHKRTKVYLEIMLRKKVALHMDQRYSIMIENTYYYCNPPPSNRQIVEPVKLTPQMM
FIRHILLTKLDRTTVNTTLRLIRKMDWDDQELVEFTCTLFTRAWDVRYTNINCLASVLSG
LATYHSDFAMAVVDNVIEDIRVGMELNLPSLNQRRIVMVKYLGLLYNYCLVDSPVIFKTL
YSLLTFGVSLDLDFPSIIDPPDSLFRITLICTLLETSGSFFDQGKKRRKLNIFLIYFQRY
YWFKRSLPIWVQSKNDAELLSAKSVSETKTDLHTGELTSSVEEPAVNHSEDSLILNNPES
SVDISSLNSDTQTNLPMFVPVRFPVAVEQQYFETLQQFRGNVGRAKNFTEAQRLVRHLEA
RCLPRLARLKATYGLTSESENVENGGQDLKIISENKSLRPTGPGHMDTIAEEAEQEDGDI
QLGDDEYSMDEEDSDLDDEDEEQGGETHSSQRRQSTGLIESDGSRRRARVDSQQSQEDID
LTLEKTEEKEAEEEEIDQNYELKPRFIDCPEDTAFCEALDKMIAEALLSSTSGSNSSSVS
GTVTSVTSTINVSTDTNPASSRTLSVNVLPAPEILQLAAAKSRLAMKEDGSSSTNKVNQQ
AINHHNSTLHSVPTKSNGDNLKINHSDTLSAVNGEDSQNTVPFTLVSRRGNKPHLIPLAV
PDSVQFAARYIQAAAAEREERARMKQLVLEMHEAQKEEEMEWGHYGGPDAVLAHQFPVNV
NRDRWVKYNHPKGAPDADVVFGTHSQKRCAN
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaacaagatcaaattatatccgaaatagatcgaaagcaagtaaccgagttcatt
gttgaagcttctgaacgtttgtctttgagaacaacactgttggagcaaaatttagcagtt
gcaggcaaatggccagatgattccttcttcgtaaaaaaggattcaactttgaaaaagaat
actgcttttgtcaagaaagtgcgaaactttctcgatagccagaaagatgcgcttttatca
gagttcgagtccctgaatctttctaaatatgtcgaagaagtcgcaaccgcgatcgttgaa
gcgaaaataaaattaactgatattccttttatgttgaaattatgttcagcgatgtaccaa
cggtattcagattttggagtgttgttttttgatgcgtggaagaaatcattctcttcccac
aaagatttaaagaacactaatctttccaaactacgagttgatttggccttattcgctgat
cttaatacaatcggaatatttcgagacgctgatggtatccgactgttggctgggcaattg
actcttctaactgcaaatgatcatgataacttctccaatatcgggataattagtagcttc
tgtagacattgcagtgacgactggataggagtcattccgcgtcgtatacgactgttatct
gaaaagtatgaaatgccggttccacgttccgtcttcatgtcatctgaacgtcaagcaaag
tgtcgtacactattcaatgactatctagctggagcgatgcatcgtttacaaaatatgttc
aaagaaacccaacgaatcatctcaggaaacagggaccaactcgaaaatcgtggtgaagtt
agcgaagagaggcaagagcgggcggagcatttaatgtcagcctgtcgtaaatttcatgag
tccttaagtactttagctgatcttttggacgcagatccaccagttgatttttcatctatg
ataaaagatgaatctatgtcagacttgactgcacctgattcagtcgaaaaagttattcat
gaagaggttaatctgtttgaagatgaagatacacgtttattttacgaaagtctacctgat
atcaaagcaatggtacctgcgatcctttataaagaaagtgaacaagctggtgtagaatca
aatcagtcaaagaatgaggatggagatcctgccggaagtgaagatattgatattgacacc
gttgaatcagaattagctaaagaagaagcattaattcgagtatcagaagatggtaatgaa
tcaactaattgcacatctatacctgataaatcaaaaccatatctgttaaataccgatgat
ggtgaagaagatctaaatccttcggggaaagttctcatggaaacgtttttaacgcaatta
ccaaactgcattaatcgggatctcatcgatcgagcagctatcgacttttgtttgaattta
aataaacgggccaatcgtcgacggcttgctaaagctttatttagtgttccaagaacgcgt
tatgatttattaccattttatgcgcgccttgtggcttcattagccccagtgatgcctgac
ttggtacaagatatcaattctatgcttactgcagaattccgttggcgtctatctaaacga
gatcaattaaatatcgaatccaaattgaaagtggttcgatttattggggaacttgtcaaa
tttaagatttatccagctcatcaagctttgacttgtttaaaacaaattcttcctcaattt
gtacaccataacatcgatatggcctgtgctttattggatacttgtgggcgttttctttat
cgtttacctatatcacataaacgtacaaaagtttatttggaaataatgcttagaaaaaaa
gttgctttacatatggatcagcgttattctattatgattgaaaatacatattattattgt
aatccaccaccgtccaatcgccagattgtcgaacctgtgaagttgacacctcaaatgatg
tttatacgtcatattttgctaacgaaattggaccgaactaccgttaatactactttacgg
ctaattcgaaaaatggattgggatgatcaagaacttgtcgaatttacgtgcacccttttc
actagggcgtgggatgttcgctatacgaatataaattgtctagccagtgtgttatctggg
ttggctacctatcattcggactttgccatggctgttgtcgacaatgtcatcgaagatatt
cgtgtgggaatggagctcaaccttcccagtttaaatcagcgtcgaattgtaatggtcaaa
taccttggtttgttgtataactattgtctggtggattctccggtgatattcaaaacactt
tactctcttctcacatttggtgttagcttggatcttgatttcccaagtattatcgacccg
ccggattcattgtttcgaattacattaatttgcacgctacttgaaacatctggaagtttc
ttcgatcagggtaaaaagcgacgaaaattgaacatattccttatatactttcagcgttac
tactggttcaagcgttctcttcctatatgggtgcagtcgaaaaacgacgccgagttatta
tcagccaaatcagtaagtgaaacgaagacagatctccatactggcgaactaacgtcttcg
gttgaagagcctgctgtaaatcattctgaagattcattgatattaaataatcctgaatca
tcagttgatatctctagtcttaattcagatacccaaactaatctacctatgtttgttcct
gtgcgttttcctgttgcagtagagcaacaatattttgaaactttacaacagttccgtggt
aatgttggtcgagcaaaaaatttcacagaagcacaacgtctcgttcgtcatctggaagcc
cgatgcctgccacgccttgcacgccttaaggctacatatggactaacaagtgaatcagaa
aacgtggaaaatggtggtcaagacctaaaaattatttcagagaacaaatcacttcgacca
actggtcctggtcacatggatacgatagctgaagaggctgaacaagaagatggagacatc
cagctgggtgacgatgagtattctatggatgaagaagattctgatttggatgacgaagat
gaagaacaaggaggtgagactcattcatctcaacgccgtcaatctactggcttgatagaa
tcggatggtagtcgtcgtcgtgctcgcgttgatagccaacaatctcaagaggatattgat
ctcacactggagaaaacagaagaaaaagaagcagaggaagaggagattgatcagaactat
gagttgaagccacgatttattgattgtcctgaggatactgcattttgtgaagctttagat
aaaatgatcgccgaagcattattgtcatctacatcagggagtaatagtagtagtgtcagt
ggtacagttactagtgtaaccagtactatcaatgttagtactgatacaaatcctgcatca
tctcgaactctcagtgtgaatgttcttcctgctccagaaatactacaactagcagcagca
aagagtcgtttagcaatgaaagaagatggcagttcatcgacaaataaagttaaccagcaa
gcgattaatcatcataactcaacccttcattctgtgccgacaaaatctaatggagataat
ttaaaaattaatcattcggatacgttgtcagctgtaaatggtgaagatagtcaaaatact
gttccctttacactagtttcgcgtcgtggaaataaacctcatctaattccattggcagtc
ccggattcagtacaatttgcagcacgttatattcaagctgcagctgccgagagagaagaa
agagctcggatgaaacaactagtacttgaaatgcatgaagctcaaaaagaagaagaaatg
gagtggggtcattacggaggtccagatgctgttttggctcatcagttccccgtcaatgtg
aaccgtgatcgctgggtaaagtataatcatccaaaaggagcaccggacgccgatgtagtt
tttggaacacacagtcaaaaacgatgtgccaattaa
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