Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_3470
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Entry
SHJG_3470 CDS
T02063
Name
(GenBank) ATP-dependent RNA helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shy03019
]
SHJG_3470
Enzymes [BR:
shy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SHJG_3470
Messenger RNA biogenesis [BR:
shy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SHJG_3470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_19
AAA_22
ResIII
AAA_25
AAA_30
HA2_N
AAA_11
nSTAND3
Helicase_RecD
NTPase_1
AAA
Motif
Other DBs
NCBI-ProteinID:
AEY88743
LinkDB
All DBs
Position
4034406..4036931
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AA seq
841 aa
AA seq
DB search
MIRYDALDALPVRGALPALAEALDARGTAVLVAPPGTGKTTLVPLVLAGLVGGGPARRVV
VAEPRRIAARAAARRMAWLLGEKPGGSVGFTVRGERTVGRHTRVEVVTTGVLLQRLQRDQ
ELAGVDVVVLDECHERHLDADTVAAFLWDVRQALRPELRLVAASATTDAEGWARLLGGAP
VVEAAGTAHPVEVVWAPPARPVRPPHGMRVDPALLAHVASVVRRALAERAGDVLCFLPGV
GEIARVAGLLGDLGDVDVLQVHGRAPAAVQDAVLVPGARRRVVLATSVAESSLTVPGVRV
VVDSGLAREPRVDHARGLSGLTTVRASRAAGRQRAGRAGREAPGAVYRCWAEAEDGRLPA
FPAPEIKVADLTAFALQAACWGDPDASGLALLDPPPGGAMAAAREVLAAVGAVDSAGRAT
EVGVRMARLGVHPRLGRALLDTAGQGAEVVALLSEEVPRDHGDDLAGALRRVRRGGDAYA
ARWAAEVRRLRGVSEEFAHPPALHGRHQGAVQAGPGTGDDKLAGLVAALAFPERVAKLDG
GSYLMASGTRAEPAEGSALRGAPWIVVAVADRPSGKGHARVLLGTAVDEDVARAAAGALL
AEGDEVHWADGDVVARHVERLGAIELAVRPLKDADPALVRGALLDGLRQGGLGLLRWSPE
AEVLRQRLAFLRAHLGEPWPDVSDAALHARVDEWLEPELSRARRRSDLARIDAGQALARL
LPWASGEAARLDELAPERIAVPSGSRVRVDYRDPGRPVLAVKLQEMFGLRETPAVAGVPL
LVHLLSPAGRPAAVTADLASFWADGYRAVRAELRGRYPKHPWPEDPATAEPTRHTNARLR
R
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgttacgacgccctggacgcccttcctgtgcgcggcgcccttcccgccctggcc
gaggccctcgacgcccgcggcaccgccgttctcgtggcgccgcccggcaccggcaagacg
acgctggtgccgctggtgctggcggggctggtcggcggcggtcccgcgcggcgggtcgtg
gtggccgagccgcggcggatcgcggcgcgggcggcggcccggcgcatggcgtggctgctg
ggcgagaaaccgggcgggagtgtcggcttcacggtgcgcggcgagcggaccgtggggcgg
cacacgcgcgtggaggtcgtgacgaccggtgtcctgctccagcggctccagcgtgaccag
gagctggccggggtggacgtcgtcgtcctcgacgagtgccacgagcggcatctggacgcg
gacacggtggccgcgttcctgtgggacgtgcggcaggcgctgcggccggaactgcggctg
gtggccgcgtcggcgaccacggacgccgaggggtgggcgcggctgctcggcggagcgccg
gtggtcgaggcggcgggcacggcgcatccggtggaggtcgtgtgggctcccccggcgcgt
ccggtccggccgccgcacgggatgcgggtggatccggcgctgctggcccatgtggcgtcg
gtggtacggcgggcgctggccgagcgggccggggacgtgctgtgtttcctgccgggcgtg
ggcgagatcgcgcgggtggcgggcctgctgggggatctcggcgacgtggacgtgctccag
gtgcacggccgggcgccggccgccgtgcaggacgcggtgctggtgcccggggcgcggcgc
cgggtggtgctggcgacgtccgtggccgagtcgtcgctgaccgtgccgggggtgcgggtg
gtggtcgactccgggctggcgcgggagccccgggtggaccacgcgcgcgggctgagcggg
ctgacgaccgtacgggcgtcgcgggcggccgggcggcagcgggcggggcgggccgggcgt
gaggcgccgggtgcggtgtaccggtgctgggcggaggccgaggacggccgcctgccggcc
ttcccggcgcccgagatcaaggtggccgatctgaccgcgttcgcccttcaggcggcctgc
tggggcgacccggacgcctctgggctggcgttgctggatccgccgccgggcggggcgatg
gcggcggcgcgggaggtgctggcggccgtgggagccgtggactccgccgggcgggccacg
gaggtcggcgtgcggatggctcggctgggggtgcacccccggctggggcgggcgttgctc
gacaccgccggtcaaggggcggaggttgtcgccctgctttccgaggaggtgccccgcgac
cacggggatgatctcgccggtgcgttgcgccgtgtccggcgtgggggtgacgcctacgcc
gcgcggtgggccgcggaggtacggcggctgcggggcgtctcggaggagttcgcgcacccg
cccgcccttcacggccggcaccaaggcgccgtccaggccggaccgggcaccggcgacgac
aagctcgccgggctggtcgccgccctggcctttcccgagcgtgtcgccaagctcgacggc
gggtcgtacctcatggcgtccgggacgcgcgcggaaccggccgaggggtcggcgctgcgc
ggtgctccctggatcgtcgtggccgtcgccgaccggccctccggcaagggccacgcgcgc
gtgctgctcgggacggccgtggacgaagacgtggcgcgggccgccgccggcgcgctcctg
gcggagggcgacgaggtgcactgggccgacggggacgtcgtggcccggcatgtcgaacgg
ctgggggcgatcgagctggccgtacggcccctgaaggacgccgatccggctctcgtacgc
ggcgccctcctcgacgggctccggcaaggcgggctggggctgctccgctggtcgccggag
gcggaggtgctgcggcagcggctggcgttcctgcgggcgcacctgggtgagccgtggccg
gacgtgtccgacgcggcgctccacgcgcgcgtggacgagtggctggaacccgagctgagc
cgggcccggcggcggtccgatctcgcgcggatcgatgccggacaggcgctcgcgcggctg
ctgccctgggcgagcggggaggccgcccggctggacgagctcgcgcccgagcggatcgcc
gtaccgagtgggtccagggtccgcgtcgactaccgggatcccgggcggccggtcctcgcc
gtcaagctccaggagatgttcgggctgcgggagacaccggccgtcgcgggtgtgccgctg
ctcgtgcacctgctctcgcccgccgggcggcccgccgcggtcaccgccgacctcgcctcc
ttctgggcggacggttaccgggccgtccgggcggagctgcgcggccggtaccccaagcac
ccgtggccggaggacccggcgaccgccgagcccacccggcacaccaacgcgcggctcagg
cgctga
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