Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_3476
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Entry
SHJG_3476 CDS
T02063
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Pathway
shy03030
DNA replication
shy03410
Base excision repair
shy03420
Nucleotide excision repair
shy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHJG_3476
03410 Base excision repair
SHJG_3476
03420 Nucleotide excision repair
SHJG_3476
03440 Homologous recombination
SHJG_3476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shy03032
]
SHJG_3476
03400 DNA repair and recombination proteins [BR:
shy03400
]
SHJG_3476
Enzymes [BR:
shy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SHJG_3476
DNA replication proteins [BR:
shy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SHJG_3476
DNA repair and recombination proteins [BR:
shy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SHJG_3476
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHJG_3476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
DNA_pol_lambd_f
HHH_5
HHH_2
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
AEY88749
LinkDB
All DBs
Position
complement(4041400..4044126)
Genome browser
AA seq
908 aa
AA seq
DB search
MAETASKQTDKTPGGSRPRLMLMDGHSLVYRAFFALPAENFTTATGQPTNAIYGFASMLA
NTLRDEAPTHFAVAFDVSRKTWRSERFTEYKANRSKTPDEFKGQVELIGELLDAMHAHRF
AVEGYEADDIIATLATQAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPE
KVFEKYGLTPAQYPDFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVEEVKG
KAGQNLRDHLESVKLNRLLTELERQVELPKAVADLERAPYDRKAVAMVLDTLEIRNPSLR
ERLFAVDPGTEEAEATPITTDGVEIDGAILRTGELAPWLAEHGAGPLGVATVDTWALGAG
SVAEVALAAAGGAAAWFDPSELDEADENAFAAWLADAARPKVFHNAKGAMRVFAEHGWSV
EGVRMDTALAAYLVKPGRRSFDLDALSMEYLHRELAPAAAADGQLAFGADDGAEAEALMV
QARAVLDLGTAFEGRLEEVGAADLLRDMELPTSALLARMERHGIAADRPHLEAMEQMFAG
AVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLATQTD
NELPVIMLRHREQAKLRVTVEGLIKTIAGDGRIHTTFNQTVAATGRLSSTDPNLQNIPVR
TDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTAASRV
FGVEPGAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEARALMDAYFERFGGVRDY
LRRAVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAML
KVDSALREADLRSRMLLQVHDEIVLEIAPGERAAAEEIVRREMAGAVQLRAPLDVSVGVG
PDWESAAH
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
gtggcagagacagcatcgaagcagaccgacaagacccccggcggctcccgtccccggctg
atgctcatggacgggcactcgctggtctaccgcgcgttcttcgcgctgcccgcggagaac
ttcacgaccgcgaccggccagccgacgaacgcgatctacggcttcgcgtcgatgctggcc
aacaccctgcgtgacgaggcgcccacgcacttcgcggtggctttcgacgtctcccgcaag
acctggcgctccgagcggttcaccgagtacaaggcgaaccgctccaagaccccggacgag
ttcaagggccaggtcgagctgatcggcgagctgctcgacgcgatgcacgcgcaccgcttc
gccgtcgagggctacgaggcggacgacatcatcgccaccctcgccacccaggccgaggcc
gagggcttcgaggtgctgatcgtcaccggcgaccgcgactccttccagctggtcagcgag
cacaccaccgtgctctacccgaccaagggcgtctcggagctgacccgcttcaccccggag
aaggttttcgagaagtacggattgacgcctgcccagtacccggacttcgcggctctgcgc
ggcgacccgtccgacaacctccccggcatccccggggtcggcgagaagaccgccgcgaag
tggatcaaccagttcggctccttcgccgagctggtcgagcgggtggaggaggtcaagggc
aaggccgggcagaacctccgcgaccacctggagtccgtcaagctcaaccgcctcctcacc
gagctggaacgccaggtggagctgccgaaggcggtcgccgacctggagcgggccccgtac
gaccgcaaggccgtcgcgatggtcctggacaccctggagatccgcaacccgtcgctgcgc
gagcggctcttcgccgtcgaccccggcacggaggaggccgaggccaccccgatcaccacc
gacggcgtcgagatcgacggcgccatcctgcgcaccggcgagctggccccctggctcgcc
gagcacggcgccggccccctgggcgtcgccaccgtcgacacctgggcgctgggcgccggc
tcggtcgccgaggtcgccctcgccgcggccgggggagcggcggcctggttcgacccgtcg
gagctggacgaggccgacgagaacgccttcgccgcctggctggccgacgcggcccgcccc
aaggtgttccacaacgccaagggcgccatgcgggtcttcgccgagcacggctggagcgtc
gagggcgtgcgcatggacaccgcgctcgccgcctacctggtcaagcccggccgccgctcc
ttcgacctggacgcgctgtcgatggagtacctgcaccgcgagctggcccccgccgcggcg
gccgacggccagctggccttcggcgcggacgacggcgccgaggccgaggccctgatggtc
caggcccgcgccgtcctggacctcggcacggccttcgagggccgcctggaggaggtcggc
gccgccgacctgctgcgcgacatggagctgcccacctccgcgctgctcgcccgcatggag
cgccacggcatcgcggcggaccggccgcacctcgaagcgatggagcagatgttcgcgggc
gccgtgcagcaggccgtgaaggaggcgcacgcggcggccggccacgagttcaacctcggc
tcgcccaagcagctccaggaggtcctcttcggcgagctggccctgccgaagacgaagaag
accaagaccggctacaccacggacgccgacgccctggcctggctcgccacccagaccgac
aacgaactgcccgtgatcatgctccggcaccgcgagcaggccaagctgcgggtgaccgtc
gagggcctgatcaagaccatcgcgggggacggccgcatccacaccaccttcaaccagacg
gtggccgcgaccgggcgtctgtcctccaccgaccccaacctccagaacatccccgtccgc
acggacgagggccgggcgatccgccggggcttcgtggtcggcgagggcttcgagtccctg
atgaccgcggactacagccagatcgaactgcgcgtcatggcccacctctccgaggacgcg
ggcctgatcgaggcgttcacctccggcgaggacctgcacaccaccgccgcctcccgggtg
ttcggcgtcgagcccggcgcggtcgacgccgagatgcgccgcaagatcaaggcgatgtcg
tacggcctcgcgtacggcctgtccgcgttcggcctctcccagcagctgaacatcgaggcg
gccgaggcccgcgccctgatggacgcctacttcgagcgcttcggcggggtgcgggactat
ctgcgccgggcggtcgacgaggcccgggcgacgggctacaccgcgacgctcttcgggcgc
cgccgctacctgcccgacctcaacagcgacaaccgccagcgccgcgaggcggccgagcgc
atggccctcaacgcgcccatccagggcacggcggcggacatcgtgaagatcgccatgctc
aaggtggacagcgcgctgcgggaggcggacctcaggtcccgcatgctcctccaggtgcac
gacgagatcgtgctggagatcgcccccggcgagcgggcggcggcggaggagatcgtccgc
cgcgaaatggcgggcgccgtgcagctcagggccccgctggacgtctcggtgggcgtgggc
ccggactgggaatcggcggcccactag
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