Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_4533
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Entry
SHJG_4533 CDS
T02063
Name
(GenBank) RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shy03021
]
SHJG_4533
Transcription machinery [BR:
shy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SHJG_4533
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
HTH_23
HTH_Crp_2
HTH_24
MarR_2
HTH_3
Sigma70_ECF
MarR
DUF7343
HTH_Tnp_ISL3
NirdL-like_HTH
Apolipoprotein
IF2_N
Motif
Other DBs
NCBI-ProteinID:
AEY89804
LinkDB
All DBs
Position
5223261..5224157
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AA seq
298 aa
AA seq
DB search
MSPRLDASPTPIATSTPPPEQLDHPIDPLDPFEGLPEIPPYDEIGPVDARALSKTLFERL
ESLEEGTHEHAYVRNTLVELNLALVKFAASRFRSRSEPMEDIIQVGTIGLIKAIDRFELS
RGVEFPTFAMPTIIGEIKRFFRDTSWSVRVPRRLQELRLDLAKAGDELAQQLDRAPTVAE
LAERLGISTDEVVEGMAASNAYTAASLDAQPDEDESEGALADRIGYEDHGLEGIEYIESL
KPLIAELPPRDRKILSLRFVANMTQSEIGEELGISQMHVSRLLSRTLVRLRKGLTVEE
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccccggctcgacgcatcgcctaccccgatcgcgacgtcgacacccccaccggaa
caactggatcatcccatcgaccccctcgaccccttcgagggcctcccggagatccccccc
tacgacgagatcggcccggtcgacgcgcgggccctgtccaagaccctcttcgagcgcctg
gagtcgctggaggaagggacgcacgagcacgcgtacgtccgcaacaccctcgtcgagctc
aacctcgcgctcgtcaagttcgccgcctcccgcttccgctcccgcagcgagccgatggag
gacatcatccaggtcggcaccatcggcctgatcaaggcgatcgaccgcttcgagctctcc
cgcggcgtcgagttccccaccttcgcgatgccgaccatcatcggcgagatcaagcggttc
ttccgtgacacctcgtggtccgtgcgcgtcccgcgccggctccaggagctgcggctcgac
ctggccaaggccggcgacgagctggcgcagcaactggaccgcgcccccacggtcgcggaa
ctggccgagcggctgggcatctccaccgacgaggtcgtcgagggcatggccgcctcgaac
gcctacaccgccgcgtcgctggacgcccagccggatgaggacgagtccgagggcgcgctc
gcggaccgcatcggatacgaggaccacgggctcgaaggcatcgagtacatcgagtcgctc
aagcccctgatcgccgaactcccgccccgggaccgcaagatcctctccctgcggttcgtg
gcgaacatgacccagtcggagatcggcgaggaactcggcatctcccagatgcacgtgtcc
cggctgctgtcgcgcacgctggtacggctgcgcaaggggctgaccgtggaggagtga
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