Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_5052
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Entry
SHJG_5052 CDS
T02063
Name
(GenBank) RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shy03021
]
SHJG_5052
Transcription machinery [BR:
shy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SHJG_5052
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_Crp_2
Sigma70_ECF
HTH_3
HTH_24
MarR
DUF7343
Motif
Other DBs
NCBI-ProteinID:
AEY90320
LinkDB
All DBs
Position
5790484..5791425
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AA seq
313 aa
AA seq
DB search
MSADQGSSKVLTPTLSEAAPKELDALDVLDGFEGVTALEAVPSPAAGPAAEAVPAAQVTA
AIDTRTLSRSLFLRLAALGEDSPERAYVRDTLIELNLPLVRYAAARFRSRNEPMEDIVQV
GTIGLIKAIDRFDCERGVEFPTFAMPTVVGEIKRFFRDTSWSVRVPRRLQELRLALTKAS
DELSQKLDRSPTVTELAAVLGVSEEDVVDGLAVGNAYTASSLDSPAPEDDGGEGSLADRL
GYEDTALEGVEYRESLKPLLAKLPPRERRIIMLRFFANMTQSQIGEEVGISQMHVSRLLT
RTLAQLREGLISD
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaccagggcagctcgaaggtgctgacgcccacgctgagcgaggcagcgccc
aaggagctcgacgctctcgacgtcctcgacggcttcgagggtgtcacggccctcgaagcc
gtgccgtccccggccgccggcccggccgccgaagctgtcccggccgcgcaggtcacggcc
gccatcgacacccgcaccctgtcccgctcgctgttcctgcgcctggccgcgctgggcgag
gacagccccgagcgggcgtacgtccgggacaccctgatcgagctgaacctcccgctggtc
cgctacgcggcggcgcggttccgctcgcgcaacgaaccgatggaggacatcgtccaggtc
ggcaccatcggcctgatcaaggcgatcgaccggttcgactgcgaacggggcgtggagttc
ccgacgttcgcgatgccgaccgtcgtgggcgagatcaagcggttcttccgcgacacctcc
tggtcggtgcgcgtcccgcgccggctccaggagctgcgcctggccctcaccaaggccagc
gacgagctgtcccagaagctggaccgctcccccacggtgaccgagctggccgccgtgctc
ggtgtctccgaggaggacgtggtcgacggcctcgcggtcggcaacgcctacaccgcctcc
tccctcgactccccggcccccgaggacgacggcggcgagggctcgctcgccgaccggctc
ggctacgaggacacggccctggagggcgtggagtaccgggagtccctcaagccgctgctg
gccaagctcccgccccgggagcgccggatcatcatgctgcgcttcttcgccaacatgacc
cagtcgcagatcggcgaggaggtcggcatctcccagatgcacgtctcccgtctgctgacc
cggacgctggcgcagttgcgggagggtctgatctcggactga
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