Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_5468
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Entry
SHJG_5468 CDS
T02063
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shy03032
]
SHJG_5468
03400 DNA repair and recombination proteins [BR:
shy03400
]
SHJG_5468
Enzymes [BR:
shy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SHJG_5468
DNA replication proteins [BR:
shy03032
]
Prokaryotic type
DNA Topoisomerases
SHJG_5468
DNA repair and recombination proteins [BR:
shy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SHJG_5468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AEY90736
LinkDB
All DBs
Position
6258078..6260909
Genome browser
AA seq
943 aa
AA seq
DB search
MSPTSETAQGGRRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPNGAAEVPEKYTGE
VRRLGVDVDHDFQPIYVINADKKAQVKKLKDLLKDSDELFLATDEDREGEAIAWHLQEVL
KPKIPVKRMVFHEITKDAIREAVANPRQLNQKLVDAQETRRILDRLYGYEVSPVLWKKVM
PRLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFSTGRAGDPSDPSSLVARLQTVD
GRRVAQGRDFDSLGQLKSENTLHLDEATARALAAALENTRFSVRSVESKPYRRSPYAPFR
TTTLQQEASRKLGFGAKATMQIAQKLYENGYITYMRTDSTTLSDTAISAARAQVTQLYGA
DYLPPQPRTYAAKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFKLYELIWKRTVASQMK
DATGNSVTVKIGGTAADGRDVEFSASGKTITFHGFLKAYVEGADDPNAELDDRERRLPQV
AEGDALSAEEITVDGHATKPPARYTEASLVKELEEREIGRPSTYASIIGTILDRGYVFKK
GTALVPSFLSFAVVNLLEKHFGRLVDYDFTARMEDDLDRIAAGEAKAVPWLKRFYFGEGT
ATGGAADAGNGDGDHLGGLKELVTDLGAIDAREVSSFPVGNDIVLRVGRYGPYIERGEKD
TEQHQRADIPDDLAPDELTVELAEELLAKPSGDFELGTDPATGHAIVAKDGRYGPYVTEV
LPEGTPKTGKNAVKPRTASLFKSMSLDTVTLDDALKLMSLPRVVGTDADGQEITAQNGRY
GPYLKKGTDSRSLQSEDQLFTITLEEAQAIYAQPKQRGRAAAKPPLKELGEDPVSGKPVV
VKDGRFGPYVTDGETNATLRSGDSVETITSERGFELLAEKRAKGPAKKTAKKAAAKKTAP
AKKTAAKKTAAKKTTAAAKKTTAKKTTAKKATASRATASGAED
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccgaccagcgagaccgcacagggcggccgccgactcgtcatcgtcgagtcgcct
gccaaggcgaagacgatcaagggctacctcggccccggatacgtcgtcgaagcgagcgtc
gggcacatccgcgaccttcccaacggcgccgcggaggtgcccgagaagtacaccggcgag
gtccgtcgcctcggtgtggacgtcgaccatgacttccagccgatctatgtgatcaacgcg
gacaagaaggcccaggtcaagaagctcaaggacctcctgaaggactccgacgagctgttc
ctcgccactgacgaggaccgggagggcgaggcgatcgcctggcacctccaggaggtcctg
aagccgaagatcccggtcaagcgcatggtgttccacgagatcaccaaggacgcgatccgc
gaggccgtcgccaacccgcgccagctcaaccagaaactggtcgacgcccaggagacccgc
cgcatcctcgaccgcctctacggctacgaggtctccccggtgctgtggaagaaggtcatg
ccccggctgtcggccggccgcgtgcagtccgtcgccacacggctcgtcgtggagcgggaa
cgcgagcgcatcgccttccgttccgctgagtactgggacctgacgggcaccttctcgacc
ggccgcgcgggggacccgtcggacccgtcgtcgctggtcgcccggctccagaccgtcgac
ggccggcgggtcgcgcagggccgcgacttcgactccctgggacagctcaagagcgagaac
accctccacctcgacgaggcgaccgcccgcgccctcgccgccgccctggagaacacccgc
ttctccgtgcggtccgtcgagtccaagccgtaccgccgctcgccgtacgccccgttccgt
acgacgacgctccagcaggaggccagccgcaagctcggcttcggcgcgaaggcgaccatg
cagatcgcccagaagctgtacgagaacggctacatcacgtacatgcgtacggactccacg
acgctgagcgacacggcgatctccgctgcccgcgcccaggtcacgcagctgtacggggcc
gactacctgccgccgcagccgcgcacctacgccgccaaggtcaagaacgcccaggaggcg
cacgaggcgatccgtccgtcgggtgatcgtttccgcacgcccgcggagaccggcctgacc
ggtgaccagttcaagctgtacgagctcatctggaagcggaccgtcgcctcccagatgaag
gacgcgaccggcaacagcgtcacggtgaagatcggcggcaccgccgccgacgggcgggac
gtcgagttcagcgcctccggcaagacgatcaccttccacggcttcctgaaggcctacgtc
gagggtgccgacgacccgaacgccgagctggacgaccgcgagcgccggctgccgcaggtc
gccgagggcgacgcgctgtccgccgaggagatcacggtcgacggccacgccaccaagccc
ccggcccgctacaccgaggcctccctggtcaaggagctggaagagcgcgagatcggccgc
ccgtcgacgtacgcgtcgatcatcggcacgatcctggaccgcggctacgtcttcaagaag
ggcacggccctggtgccgtcgttcctgtcgttcgccgtggtgaacctcctggagaagcac
ttcggtcggctcgtcgactacgacttcacggccaggatggaggacgacctcgaccgcatc
gcggcgggtgaggccaaggccgtgccgtggctgaagcgcttctacttcggcgaggggacg
gccacgggcggcgcggccgacgccggcaacggcgacggcgaccacctcggcggcctcaag
gagctggtgaccgacctgggcgcgatcgacgcgcgcgaggtgtcgtcgttcccggtcggc
aacgacatcgtccttcgcgtcggccgctacgggccgtacatcgagcgcggcgagaaggac
accgagcagcaccagcgcgccgacatcccggacgacctggcaccggacgagctgaccgtc
gagctggccgaggaactgctggccaagcccagcggcgacttcgagctgggcaccgacccg
gccaccggccacgcgatcgtcgccaaggacggccgctacggcccgtacgtcacggaggtc
ctccccgagggcaccccgaagaccggcaagaacgcggtcaagccgcgcacggcctcgctc
ttcaagtccatgtcgctcgacacggtgacgctggacgacgcgctgaagctgatgtcgctg
ccgcgtgtcgtcggcaccgacgcggacggccaggagatcaccgcgcagaacggccgctac
ggcccgtacctgaagaagggcacggactcgcgctcgctccagtccgaggaccagctcttc
acgatcacgctggaggaggcgcaggcgatctacgcccagccgaagcagcgtggccgggcg
gcagccaagccgccgctgaaggagctgggcgaggacccggtctccggcaagccggtcgtg
gtcaaggacggccgcttcggtccgtacgtcaccgacggcgagaccaacgcgaccctgcgc
tccggcgacagcgtcgaaacgatcacttctgagcgtggtttcgagctgctcgccgagaag
cgcgcgaaggggcccgccaagaagaccgcgaagaaggcggcggcgaagaagaccgccccg
gcgaagaagaccgccgccaagaagacggccgcgaagaagacgacggctgcggcgaagaag
acgaccgccaagaagaccaccgccaagaaggcgacggcttccagggcgacggcttccggc
gcggaggactga
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